Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00865 ATGGAACCAGTGAGGAATACAACAATTGCACTACAATTGTGCAGAAAGCAAAACATATTCTGTGAGGATTCATCTCTTGCCTCAAAGTGCAACATGATGTGCACAAAGCTTGTAACATTTCAGTTTATTCTCATCACGTTTTTCTTTTCACTTTTAAGATTCTCTTCCTTGGAAGTTTCTGGTGTTTCTTTAGCCAACGGTACTGTTATGGTTGGCTATGAAGCTGCCGAAGATGAAGACATTGAAGCAAGTGCCCTATTGAGGTGGAAAGCCAGCCTTGATAACCAAAGCCAGGTTTCCTTATCTTCTTGGTCTACTTTTACTAGTCCTTGCAAGTGGAAGGGAATAGTTTGTGATGAATCCAACTCTGTCAGCACTATAAATCTTGCAAAATTTGGACTAAAAGGTACACTTCTCAATCTCAGTTTCTCATCATTTCCAAAGCTTCTGAGGTTGTGTTTAAGTTACAACAACCTCAATGGACCTATTCCCCGCGAAATTGGTAACATGTCCAAAATTTCTGAGTTGAAAATGGATCATAATCATTTTAGTGATTCCATCCCCCAAGAAATAGGGGCACTGCATAACTTGGAGTATCTGTTCTTGAGAGCAAATCAACTTTCTGGTTCCATCCCCCCAACAATTGGAATGTTGAAAAATCTTGTTGCACTTGATTTATCATCCAACCATCTCTCTGGTACAATCCCTTCAGTTAGAAATTTAACAAATTTAGAACAACTTATCCTCTATAATAACCTTCTCTCTGGTCCTATTCCTGAGGAGTTGGGAGGACTTCATCTTCTCACAACAATCAAATTGTTAAAAAATCATCTTTCAGGGCCAATCCCGTCTTCCATAGGAGACCTGGCTAATTTGAGGACACTTCAGCTCACTCGTAATAAACTACATGGATCAATTCCTTCCTCTCTTGGAAACTTGACAAAACTCATTGAATTGTCCATGTCTGAAAACAAGCTTTCTGGATCAATTCCTGCTTCAATAGGAAACTTGGTCAATCTAGAAAAGTTTAACCTTGCAGTAAACAATCTTTCTGGACCTATTCCCTCTACCTTCAGAAATTTTACTAAGCTTACCTTCCTATTACTTCATATGAACAAACTTACTGGAAGTTTTTCAACAGCAACAAGTAACCTTACCAATTTAGTAAGCTTGCAACTAAGCTCTAATTATTTCACTGGCCCTTTGCCACAATATATATGCCTTGGAGGGTCACTTTCATATTTTGCAGCCAATAAGAATCTTTTGAATGGTCCAATTCCAACAAGTTTGAAGAACTGCTCCAGTCTTCAAAGGCTCAACCTTGCAGAAAATATGTTGATCGGAAATATTTCAAATGATTTTGGTGTATATCCAAATCTGGAGTACATTGATCTGAGTAGAAATGCCTTAAACGGTCAACTTTCATCAAATTGGGTCAAATGTCATAATCTCATAGGCCTAATGATCTCATACAATAATTTGTTCGGTGGTATACCCCCAGAGCTAGGCCAGGCCCCTAAATTACAAAAGCTTGAACTGTCTTCAAATCGTCTAGCAGGAAAGATTCCAAAAGAACTTGGGAACTTGACCTGCTTGTCTGAACTCTCCATAAGTAAGAACAAACTTTCGGGCAACATTCCCACTGAAATTGGTTCCTTAGAGCAACTTCGGTACTTTGATCTTGCAGCAAATGGTTTAAGTGGTCCAATCCCAAAACGGCTTGGAAGGTTGCACAAGTTAAATCACTTGAACTTAAGCCATAACAAATTAATGGAAAGCATTCCATCTGAATTTAGCCAATTGCAATATCTTCAAAATCTTGATCTTAGTTGGAATTTTTTAAATGGAAAAATTCCAGCAGCACTTGGAAAATTGAAGATGTTGGAAAACTTGAACCTCTCCCACAACAATCTCACTGGAAACATTTCTTCCAGTTTCAAGGATATGTTGAGTTTGACAAATGTTGACATATCTAACAACCAATTAGAGGGTCCAATTCCTAACAATCGAGTCTTCCTTAACGCTCCATTTGAAGCATTGAAAAACAATAAAAACTTGTGTGGCTATGCTTCCGGGCTGATGCCTTGCCCGCGGTTGTTGAATCTCAATCCTCATAATAAAAAGGCCATGATCTTGGAACTTTTCCTTACTTTGGGTGCACTATTTGTGGTTGGAGTTTCACTATATATTCATTTTGTAAAAGCAAGAAAAATCAAAAAGCAAGAGAAAGAAGAACAAACTCGAGATCCTTTTTCTATATTGCATCATGATGGCAAAATAATGTATGAAAATATCATCGAAGCAACAAATGATTTCGATGACAAATATCTCATTGGAAGAGGAGGGTTTGGAGGTGTTTACAAGGCCATCTTACCCTCTGGCCACATTGTTGCTGTGAAAAAACTTCAAGTTGAAGTTGACAGGGAAAAGCTTGATTTTAAGGCTTTTACAGCTGAAGTTCGAGCCTTGACAGAAATCAAACATCGTAACATTGTGAAGTTGCATGGGTTTTGTGAACATCCACGCTATTGTTTATTGGTTTATGAGTTCCTAGAAGGTGGCAGCTTGGATAAAGTACTAAACAGCGACACACATGCAGAAATGTTTGATTGGAATAAGAGGGTTAACGTTATTAAAGGTTTGGCAAATGCTTTGTATCACATGCATCATGGTTGCTCTCCTCCTATTGTTCATCGTGACATATCAAGCAAGAATGTTCTTATAAATTTGGAATATGAAGCTCGAATATCTGACTTTGGAACAGCAAAGATTCTAGATCCTAATTCACGTAATTTAACTTCGTTTGCTGGCACTTATGGATATGCTGCACCAGAGCTTGCTTATACAATGGAAGTGAATGAAAAATGCGATGTGTTCAGTTTTGGAGTTCTTTGTTTGGAGATAATAATGGGAAATCATCCACGAGATCTCATTTCTTGGATGCATTCATCCTCTTCAACACCAGTGACATCTAATTTGCTATTGAAGGATGTGTTAGACCAACGACTTCCTCTTCCAGTGATGCCAGTTGTTAAGGAGGTGGTCTTGATTGCAAAAGCGGCATTTGCTTGTTTGAATGAAAGATCATTTTCTCGTCCAACCATGGAAGATGTGCATAACAAGTTTGTTATGCCTAACTCACCTTTAATGAGGGAGACATTCAACACCATTGTACTAGGACAACTTCAAAATCATTGA 3198 0.3812 MEPVRNTTIALQLCRKQNIFCEDSSLASKCNMMCTKLVTFQFILITFFFSLLRFSSLEVSGVSLANGTVMVGYEAAEDEDIEASALLRWKASLDNQSQVSLSSWSTFTSPCKWKGIVCDESNSVSTINLAKFGLKGTLLNLSFSSFPKLLRLCLSYNNLNGPIPREIGNMSKISELKMDHNHFSDSIPQEIGALHNLEYLFLRANQLSGSIPPTIGMLKNLVALDLSSNHLSGTIPSVRNLTNLEQLILYNNLLSGPIPEELGGLHLLTTIKLLKNHLSGPIPSSIGDLANLRTLQLTRNKLHGSIPSSLGNLTKLIELSMSENKLSGSIPASIGNLVNLEKFNLAVNNLSGPIPSTFRNFTKLTFLLLHMNKLTGSFSTATSNLTNLVSLQLSSNYFTGPLPQYICLGGSLSYFAANKNLLNGPIPTSLKNCSSLQRLNLAENMLIGNISNDFGVYPNLEYIDLSRNALNGQLSSNWVKCHNLIGLMISYNNLFGGIPPELGQAPKLQKLELSSNRLAGKIPKELGNLTCLSELSISKNKLSGNIPTEIGSLEQLRYFDLAANGLSGPIPKRLGRLHKLNHLNLSHNKLMESIPSEFSQLQYLQNLDLSWNFLNGKIPAALGKLKMLENLNLSHNNLTGNISSSFKDMLSLTNVDISNNQLEGPIPNNRVFLNAPFEALKNNKNLCGYASGLMPCPRLLNLNPHNKKAMILELFLTLGALFVVGVSLYIHFVKARKIKKQEKEEQTRDPFSILHHDGKIMYENIIEATNDFDDKYLIGRGGFGGVYKAILPSGHIVAVKKLQVEVDREKLDFKAFTAEVRALTEIKHRNIVKLHGFCEHPRYCLLVYEFLEGGSLDKVLNSDTHAEMFDWNKRVNVIKGLANALYHMHHGCSPPIVHRDISSKNVLINLEYEARISDFGTAKILDPNSRNLTSFAGTYGYAAPELAYTMEVNEKCDVFSFGVLCLEIIMGNHPRDLISWMHSSSSTPVTSNLLLKDVLDQRLPLPVMPVVKEVVLIAKAAFACLNERSFSRPTMEDVHNKFVMPNSPLMRETFNTIVLGQLQNH 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00865 1065 ProSitePatterns Protein kinases ATP-binding region signature. 778 801 IPR017441 GO:0005524
Phco3g00865 1065 Pfam Protein kinase domain 774 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00865 1065 Gene3D Ribonuclease Inhibitor 381 697 IPR032675 -
Phco3g00865 1065 PRINTS Leucine-rich repeat signature 221 234 - -
Phco3g00865 1065 PRINTS Leucine-rich repeat signature 577 590 - -
Phco3g00865 1065 FunFam Leucine-rich repeat receptor protein kinase MSP1 735 850 - -
Phco3g00865 1065 ProSiteProfiles Leucine-rich repeat profile. 579 601 IPR001611 GO:0005515
Phco3g00865 1065 SUPERFAMILY Protein kinase-like (PK-like) 754 1041 IPR011009 -
Phco3g00865 1065 ProSitePatterns Tyrosine protein kinases specific active-site signature. 896 908 IPR008266 GO:0004672|GO:0006468
Phco3g00865 1065 Gene3D Ribonuclease Inhibitor 286 380 IPR032675 -
Phco3g00865 1065 FunFam MDIS1-interacting receptor like kinase 2 851 1048 - -
Phco3g00865 1065 Gene3D Ribonuclease Inhibitor 79 238 IPR032675 -
Phco3g00865 1065 Gene3D Transferase(Phosphotransferase) domain 1 851 1049 - -
Phco3g00865 1065 PANTHER LEUCINE RICH REPEAT KINASE 2 310 1046 - -
Phco3g00865 1065 Pfam Leucine rich repeat 555 612 IPR001611 GO:0005515
Phco3g00865 1065 Pfam Leucine rich repeat 291 350 IPR001611 GO:0005515
Phco3g00865 1065 Pfam Leucine rich repeat N-terminal domain 82 119 IPR013210 -
Phco3g00865 1065 ProSiteProfiles Protein kinase domain profile. 772 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00865 1065 Gene3D Ribonuclease Inhibitor 239 285 IPR032675 -
Phco3g00865 1065 SUPERFAMILY L domain-like 91 447 - -
Phco3g00865 1065 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 385 699 - -
Phco3g00865 1065 SUPERFAMILY RNI-like 306 669 - -
Phco3g00865 1065 Pfam Leucine Rich Repeat 628 647 IPR001611 GO:0005515
Phco3g00865 1065 SMART LRR_typ_2 146 170 IPR003591 -
Phco3g00865 1065 SMART LRR_typ_2 289 313 IPR003591 -
Phco3g00865 1065 SMART LRR_typ_2 337 360 IPR003591 -
Phco3g00865 1065 SMART LRR_typ_2 625 648 IPR003591 -
Phco3g00865 1065 SMART LRR_typ_2 385 409 IPR003591 -
Phco3g00865 1065 SMART LRR_typ_2 241 265 IPR003591 -
Phco3g00865 1065 SMART LRR_typ_2 194 218 IPR003591 -
Phco3g00865 1065 SMART LRR_typ_2 529 553 IPR003591 -
Phco3g00865 1065 SMART LRR_typ_2 577 601 IPR003591 -
Phco3g00865 1065 FunFam Leucine-rich repeat receptor protein kinase EMS1 282 381 - -
Phco3g00865 1065 FunFam Nuclear pore complex protein NUP107 79 237 - -
Phco3g00865 1065 SMART LRR_sd22_2 529 555 - -
Phco3g00865 1065 SMART LRR_sd22_2 194 209 - -
Phco3g00865 1065 SMART LRR_sd22_2 577 596 - -
Phco3g00865 1065 SMART LRR_sd22_2 601 633 - -
Phco3g00865 1065 SMART LRR_sd22_2 313 339 - -
Phco3g00865 1065 SMART LRR_sd22_2 218 243 - -
Phco3g00865 1065 Gene3D Phosphorylase Kinase; domain 1 732 850 - -
Phco3g00865 1065 ProSiteProfiles Leucine-rich repeat profile. 220 242 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00865 Phco-Chr3 7291140 7296737 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco3g00865 Pkinase 8.3e-45 CL0016