Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00859 ATGAAGAAAGACGACTGTGCAAGTACGAACATTCACATTGAAGCTGAGAAGCTTTTCTGCTATGGTACTTCATTATATAAGTCCCTTTCAATGTCCAATATCTTTGTACTAACTATACTATACTATACCATACCATTATCACCAAGTACCTCAAACATGGTTTTCACTAAGCTTTCATTAGTTATGTGTTCACTCTTAGGCCTCCATTTCTCCCCACTTTTCACCATTTTTTCTTTTGCTGCAACCACTGAAGAAAACCAAGTGAGGGAAGCAGGTGCTTTACTCGAGTGGAAAGCTAGCCTTGAAAACCAAAGCCAAGCTTCTCTATCTTCATGGAGCAGAGGTGTGAGTCATTGCAAGTGGAAAGAAATCATTTGTGACAAATCCAACTCTGTCACCACCATAAATGTAGCAAATCATGGCCTAAAAGGTACTCTTCACACTTTCAACTTCTCATCCTTTCCCAACCTGCTAACTCTGGATGTTAGTAACAACAGTTTCAGTGATACTATTCCTCACCAAATTGCCAGCTTGTCCAGAGTTTCTCAGTTGATAATGAATAATAATAATTTTAGTGGTCCAATCCCCATTTCCTTGATGAAGTTGGCTACCTTGAAGATTCTAAACTTCAAATACAATAGCCTTTCTGGCCCTCTTCCTGAGGAGATTGCAGAATTGAGGAACTTAGAGCGTCTGTTATTTGAATCAAATCACCTTTCTGGTACCATTCCTCCAACAATTGGAAGGATGGCCAACCTTGTTGAACTTAATTTGCAACTTAACTCTATCAATGGTACAATTCACCCTTCAATTGGGAACTTGACAAATTTAAAATTCCTCAGGCTTCAACAAAATAGTCTCTCTGGCTCCATTCCCTACTTCTTAGGAGACATGACCAATTTGCTTGTTCTTGAAATCGATCAAAATAGATTAACAGGACCAATTCCTCCCCATATTGGAAACTTGACAAAGATGGTTAATCTGTCTTTGGCCGTTAACATGCTTTCTGGACCAATTCCTCCTTCCCTTGGAAACCTGGTCAATCTAATGGCCTTGGAACTTTCCAGGAACAATCTTTCCGGAGTTATTCCTTCCACCTTCGCAAATTTGACAAACCCCATCTTTTTCAGTGTGTTCATAAACAAACTTGGAGGCAGATTACCACCAGGAATGAATAACTTCACCAATTTAAAGAACTTACAACTAGGTGAAAATAGTTTCACTGGCCCTCTGCCACAACAAATTTGCCTTGGTGGGTCGCTAATCCTTTTAAGTGCTGAAGATAATCATTTCACGGGTCCAGTTCCAAAAAGCCTGAAAAATTGCTCCACTCTTCGTAGACTCAGACTAGATGGAAACCAGTTGAGTGGAAACATATCAGATGAATTTGGTGTTTATCCATTGTTGAAATACATTGATCTGAGTAGGAATAATTTTTATGGCGACATTTCCCCAAATTGGGCCAAGTGTCCTAGTCTTTCAAGCCTTATAATGCCCAACAACAACTTATCTGGTAGTATACCACCAGAACTCAGCCAGGCACCCGTGTTAGAAGCACTTGTCTTGTCTACAAATCATTTAACAGGGAAGATTCCAAAAGAACTCGGGAAGTTGACCTCTTTGTTGAAGTTATCAGTAAGCAACAATGAACTTTCCGGCACCATTCCTACAGATATAGGTGCTTTGTCCAGCCTTAACACTTTGGAGCTTTCAGCAAATAATTTAGTTGGTGCAATTCCAAAACAGTTGGGAGAGTTATTCAAGTTGCTTAACTTGAACTTGAGCAACAACAGATTGACAGAAAGCATTCCCTTGGAATTTGGCCGTTTGCAATCTCTTCAAAGTCTTGATCTTAGTGTCAATTTGTTAAATGGAGAAATACCATCTGCACTTGCAAGTATGCAAAGATTGGAAACGCTAAATCTCTCTCACAACAATCTCTCTGGAGTCATTCCGTCTAATTTCAAGGATGGCTTGACAAAGGTTGACATATCTAGTAACCAATTGGAGGGTCCAATTCCTAACAGTCGAGCCTTTCTCAATGCATCATTTGATGCATTGAAAGATAATAAAGGCTTGTGTGGGAATGTCTCCGGTTTGGTGCCTTGTAGCAGCAGTCGTAATGGTAAAGTGAAAATAAATGTCACCATGTTGGCATTACTCCTTACTTTTGGTGCTCTGCTTCTAGTAGCACTCGTGGTTGGAGTTTTGTTATGTATTCGGTACAGAAGAGGAACAGAAAGCAAAAAGGAGGATGCTAAAGAAGAAAAAACTCGGGAGCATTATGCCATATGGAGTTATGATGGAAAATTAGTGTATGAAAATATCATTGAAGCCACAGAGGAGTTTAATGACAAATATCTGATTGGAGAAGGAGGGTCTGCATCTGTTTATAAGGCTAAATTACCCACAGGACAGATAGTTGCTGTGAAAAAGCTTAAAGATGCACCCAATGAAGAAACACCGGATTTAAGAGCTTTTATGACTGAGGTTAAAGCCTTGGGAGAAATCAAGCATTGTAACATTGTGAAGTCACTAGGATATTGTTTACATCCACGTTACTCCTTTTTGGTTTATGAGTTCCTAGAGGGGGGTAGTTTGGATAAAGTACTCATCGATGATACACGTGCAACAATGTTTGATTGGAACACGAGGGTAAAGGTTGTTAAAGGTGTGGCAAATGCTTTGTATCATATGCATCATGGTTGCTTTCCTCCTATTATTCATCGAGACATATCAAGCAAGAATATTCTTATAGATTCGGAATACGTAGCCCGTGTTTCTGACTTCGGAACAGCCAAAATTCTGAATCCTGATTCACGCAATTTAACCGCGTTTGCAGGCACACGTGGGTATGCTGCACCAGAGCTTGCTTATACAATGGAAGTGAATGAAAAATGTGATGTGTTCAGTTTTGGAGTGCTTTGTTTGGAAATAATGATGGGAAATCATCCAGGAGATCTCATTTCATCGTTATTTTCACCCTCTGAAACATCACCAGCGTACAATTTGCTGTTGAAGGATGTGTTGGACCAAAGACTGCCCCTTCCAGTGAAGCCAGTTGTTGAGGAGGTGATCTTGATCGCGAAAATAACATTTGCTTGCTTAAGTGAAACTCCACGTTTTCGTCCAAGCATGGAACAAGTGCATAACCATTTTCTGAAGCCAGAATCATCTTCACTCAATTCACTCTCCATCATCACACTTGCTCAACTTGTCAATAATTGA 3228 0.399 MKKDDCASTNIHIEAEKLFCYGTSLYKSLSMSNIFVLTILYYTIPLSPSTSNMVFTKLSLVMCSLLGLHFSPLFTIFSFAATTEENQVREAGALLEWKASLENQSQASLSSWSRGVSHCKWKEIICDKSNSVTTINVANHGLKGTLHTFNFSSFPNLLTLDVSNNSFSDTIPHQIASLSRVSQLIMNNNNFSGPIPISLMKLATLKILNFKYNSLSGPLPEEIAELRNLERLLFESNHLSGTIPPTIGRMANLVELNLQLNSINGTIHPSIGNLTNLKFLRLQQNSLSGSIPYFLGDMTNLLVLEIDQNRLTGPIPPHIGNLTKMVNLSLAVNMLSGPIPPSLGNLVNLMALELSRNNLSGVIPSTFANLTNPIFFSVFINKLGGRLPPGMNNFTNLKNLQLGENSFTGPLPQQICLGGSLILLSAEDNHFTGPVPKSLKNCSTLRRLRLDGNQLSGNISDEFGVYPLLKYIDLSRNNFYGDISPNWAKCPSLSSLIMPNNNLSGSIPPELSQAPVLEALVLSTNHLTGKIPKELGKLTSLLKLSVSNNELSGTIPTDIGALSSLNTLELSANNLVGAIPKQLGELFKLLNLNLSNNRLTESIPLEFGRLQSLQSLDLSVNLLNGEIPSALASMQRLETLNLSHNNLSGVIPSNFKDGLTKVDISSNQLEGPIPNSRAFLNASFDALKDNKGLCGNVSGLVPCSSSRNGKVKINVTMLALLLTFGALLLVALVVGVLLCIRYRRGTESKKEDAKEEKTREHYAIWSYDGKLVYENIIEATEEFNDKYLIGEGGSASVYKAKLPTGQIVAVKKLKDAPNEETPDLRAFMTEVKALGEIKHCNIVKSLGYCLHPRYSFLVYEFLEGGSLDKVLIDDTRATMFDWNTRVKVVKGVANALYHMHHGCFPPIIHRDISSKNILIDSEYVARVSDFGTAKILNPDSRNLTAFAGTRGYAAPELAYTMEVNEKCDVFSFGVLCLEIMMGNHPGDLISSLFSPSETSPAYNLLLKDVLDQRLPLPVKPVVEEVILIAKITFACLSETPRFRPSMEQVHNHFLKPESSSLNSLSIITLAQLVNN 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00859 1075 ProSiteProfiles Protein kinase domain profile. 783 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00859 1075 Gene3D Transferase(Phosphotransferase) domain 1 862 1065 - -
Phco3g00859 1075 Gene3D Ribonuclease Inhibitor 379 706 IPR032675 -
Phco3g00859 1075 ProSiteProfiles Leucine-rich repeat profile. 636 657 IPR001611 GO:0005515
Phco3g00859 1075 SUPERFAMILY L domain-like 114 293 - -
Phco3g00859 1075 ProSiteProfiles Leucine-rich repeat profile. 588 609 IPR001611 GO:0005515
Phco3g00859 1075 PANTHER LEUCINE RICH REPEAT KINASE 2 345 1057 - -
Phco3g00859 1075 FunFam Leucine-rich repeat receptor protein kinase MSP1 746 861 - -
Phco3g00859 1075 SUPERFAMILY L domain-like 232 541 - -
Phco3g00859 1075 FunFam Leucine-rich repeat receptor protein kinase EMS1 291 390 - -
Phco3g00859 1075 SUPERFAMILY RNI-like 463 676 - -
Phco3g00859 1075 ProSitePatterns Protein kinases ATP-binding region signature. 789 812 IPR017441 GO:0005524
Phco3g00859 1075 Pfam Leucine rich repeat N-terminal domain 90 127 IPR013210 -
Phco3g00859 1075 Pfam Leucine rich repeat 589 647 IPR001611 GO:0005515
Phco3g00859 1075 Gene3D Ribonuclease Inhibitor 249 378 IPR032675 -
Phco3g00859 1075 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 394 707 - -
Phco3g00859 1075 ProSitePatterns Tyrosine protein kinases specific active-site signature. 907 919 IPR008266 GO:0004672|GO:0006468
Phco3g00859 1075 Gene3D Phosphorylase Kinase; domain 1 744 861 - -
Phco3g00859 1075 FunFam MDIS1-interacting receptor like kinase 2 862 1059 - -
Phco3g00859 1075 SUPERFAMILY Protein kinase-like (PK-like) 766 1053 IPR011009 -
Phco3g00859 1075 Pfam Protein kinase domain 784 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00859 1075 Gene3D Ribonuclease Inhibitor 87 248 IPR032675 -
Phco3g00859 1075 FunFam Nuclear pore complex protein NUP107 87 243 - -
Phco3g00859 1075 SMART LRR_typ_2 634 657 IPR003591 -
Phco3g00859 1075 SMART LRR_typ_2 154 178 IPR003591 -
Phco3g00859 1075 SMART LRR_typ_2 586 609 IPR003591 -
Phco3g00859 1075 SMART LRR_typ_2 538 562 IPR003591 -
Phco3g00859 1075 SMART LRR_typ_2 298 322 IPR003591 -
Phco3g00859 1075 SMART LRR_typ_2 610 633 IPR003591 -
Phco3g00859 1075 SMART LRR_typ_2 274 297 IPR003591 -
Phco3g00859 1075 SMART LRR_typ_2 394 418 IPR003591 -
Phco3g00859 1075 SMART LRR_typ_2 226 250 IPR003591 -
Phco3g00859 1075 SMART LRR_typ_2 346 369 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00859 Phco-Chr3 7232905 7237820 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco3g00859 Pkinase 3.8e-44 CL0016