Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00843 ATGCCAGAAAACAGACAGGTTCTCAGGAATGCTGATCCTACACCTTCTGGTGACAACATTGAAGGTGGTGCAGATTTTTCTGAAGCGATTCGTCGTTTGAAAATCAATGATAATTGGGATAGAGATGCTGCAGCTCAATCTACCCAATATCCAGATCGACCCGGTGAACCTGATTGCTTATATTATTTGAGAACTGGAATGTGTGGTTATGGGAGCAACTGTCGCTACCATCACCCTGCTCATATTTCAATTGGTACTCATTATGGTGAAGAACTCCCTCAGAGGACCGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCAACATGTAAATACCACCATCCAAAGGACAGGCGTGGTGCTGCTCCTGTGTCATTCAATTCTTTAGGTCTCCCAATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACCGGGTCTTGTAAGTTTGGTGTTGCATGCAAGTTTCACCATCCACAGCATGCTTCCCTTGGAGCATATCCCTTGGCTGGTTCTCCTACCTCAACAATGATCCCTACATCAGGTTTGCCATATGCTGGAGGGTTTCCTGCATGGTCAGCAGTACCTAGAATGTCATATTTATCTGGACAAGGTGTTCAATCTTATGTGCCTCCTTTTCTGTCTTCTTCACAAAGCATTATACCCATGCAGAGCTGGAACAACTACATGGGAAGTATGAACCCAACGATGCCTACTGGTTATCTTGGATCTAATCTTGTTTATGACTTCATGAATCTGGGGGAGTCACTTTTCGGTGGGCAGGCCATAAATTCAGCTCTCCCAAATCGACCTGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCATCCAAAAGAAAGAATATCTCAATCATTAATAAATCCACTTGGCCTTCCTGTGAGACCTGGGCAAGCTGTATGCTCTTATTACAGAATCTATGGAATGTGCAAATTTGGTCCAACATGCAAATTTGATCATCCAGTTTTGACTATCCCTCAGAACTATGGCTTGACCTCACCAGCTCTATCTGCACTTGATGCTCCTCTCATTAGTAACCAAAGAGGGTTGTCAAGTGTACAATCACCTGAGACATCTCCTTCTAAATTATCTAGTGACAACAAGCTTCAGCACTCTGATGCAAAAGCTGGCACAGAAGATTCATCCAAACAAGCTGATACTACACCAAATTCCTTCCCAGCCTCCTCGGAGCCTTTACATGACTAA 1281 0.4364 MPENRQVLRNADPTPSGDNIEGGADFSEAIRRLKINDNWDRDAAAQSTQYPDRPGEPDCLYYLRTGMCGYGSNCRYHHPAHISIGTHYGEELPQRTGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVSFNSLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASLGAYPLAGSPTSTMIPTSGLPYAGGFPAWSAVPRMSYLSGQGVQSYVPPFLSSSQSIIPMQSWNNYMGSMNPTMPTGYLGSNLVYDFMNLGESLFGGQAINSALPNRPDQPECRYFMSTGTCKYGSDCKFHHPKERISQSLINPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPALSALDAPLISNQRGLSSVQSPETSPSKLSSDNKLQHSDAKAGTEDSSKQADTTPNSFPASSEPLHD 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00843 426 SUPERFAMILY CCCH zinc finger 99 124 IPR036855 GO:0046872
Phco3g00843 426 SUPERFAMILY CCCH zinc finger 318 346 IPR036855 GO:0046872
Phco3g00843 426 Gene3D - 21 89 - -
Phco3g00843 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 322 346 IPR000571 GO:0046872
Phco3g00843 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 304 IPR000571 GO:0046872
Phco3g00843 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 79 IPR000571 GO:0046872
Phco3g00843 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 167 IPR000571 GO:0046872
Phco3g00843 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 122 IPR000571 GO:0046872
Phco3g00843 426 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Phco3g00843 426 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Phco3g00843 426 SUPERFAMILY CCCH zinc finger 139 168 IPR036855 GO:0046872
Phco3g00843 426 PANTHER PROTEIN PHOSPHATASE RELATED 40 381 - -
Phco3g00843 426 ProSiteProfiles Zinc finger C3H1-type profile. 277 305 IPR000571 GO:0046872
Phco3g00843 426 SUPERFAMILY CCCH zinc finger 281 306 IPR036855 GO:0046872
Phco3g00843 426 MobiDBLite consensus disorder prediction 373 392 - -
Phco3g00843 426 Gene3D - 274 353 - -
Phco3g00843 426 Gene3D - 91 174 - -
Phco3g00843 426 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872
Phco3g00843 426 MobiDBLite consensus disorder prediction 373 426 - -
Phco3g00843 426 SMART c3hfinal6 95 122 IPR000571 GO:0046872
Phco3g00843 426 SMART c3hfinal6 320 347 IPR000571 GO:0046872
Phco3g00843 426 SMART c3hfinal6 142 167 IPR000571 GO:0046872
Phco3g00843 426 SMART c3hfinal6 53 80 IPR000571 GO:0046872
Phco3g00843 426 SMART c3hfinal6 277 304 IPR000571 GO:0046872
Phco3g00843 426 SUPERFAMILY CCCH zinc finger 58 80 IPR036855 GO:0046872
Phco3g00843 426 MobiDBLite consensus disorder prediction 1 25 - -
Phco3g00843 426 MobiDBLite consensus disorder prediction 406 420 - -
Phco3g00843 426 ProSiteProfiles Zinc finger C3H1-type profile. 320 348 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00843 Phco-Chr3 7013021 7016755 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco3g00843 zf-CCCH 4.2e-07 CL0537