Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00835 ATGATTTCCCACCTCAATCAAAACCATCCCTTTCTTTTCTCCCATGGTTCATATAAAAAACCCTTATCCACACAAAACCCGTTTCCCCTTTCTCCCAAAGTTCCAATCTTTCCTAGTTCTACAGCTATCCCTGTTCTTCAAGTTTCAAGGGTGCAATCCATTCACTCACACTTTTCCGTGAAACGGTTATCTCGGCAGGTAAAGGGGAAAGTGCAGGATGTGCTGTTAGATTACTTGCATTCGAGCAGGGGATACAGCTTCGTGGATGCTGAGTTCATTAGCAAAAACTCACCATGTTTTGTTCAAGGTTTGGTGTCAGAGTTTCATGGACAAGATGATGATGTTGCCACGTGTTTAAGGAAGTGGTTGTGGTACAACCCCATTAATGAGTTTGAACCATTCTTTGAGAGTTTGGGGATTAGCCCTCATGAGTTGCATTTGTTTCTTCCACGTGGTATGATGTATTTGTCTGATGATCATGTTTTGCTCGCCAATTTCCACGCTTTGAGTAACTATGGAGTTCCAAGGAATAGAATAGGGAAAATTTATCGAGAGGCGAAGGAGGTTTTTGAGTATCCTAATGGATTGTTGTTGTCGAAATTTCGAGGTTATGAAAATTTAGGTTTGAGTAGATCCATGGTCATCAAGCTTGTTGTTTCTTGCCCTTCACTTTTGGTTGGTGAAACGAGTGTTGAATTGGCCATGGTTCTGTATTGGTTGAAGAAAATTGGCATTGGGCATGATTGGATTGGGAATTACATGTCTTGTTTGAAAACATATTACCCTAGAAGAATGCTTGATGCAATGGAATTTCTTCATAAAGTGGGTTATTCTGAAGAACAGATGCACAATTTATTCAAGGAAAACCCTGCATTATTACTGGAAGGTCTTGAGAAGAAGCTTTTTGTATTTTTGAGTCTGGCATTTAAGTTAGGTCTCAATAAGAACATGATGTATTCTTGTTTTGTAGAATATCCCCATATCTTGATTAATAAGTGTGCAAAAAATCTTTTGGGAGTGATTGGCTTTTTGCGTTATGTTGGAATGGATATAGATGCCATTTCGCTTATTTTGTCTAACCACATGCATCTTCTGAGCTCACATCCTTTGAAAGGCCCTAAAGTTGTTTGTTTGCAGTTAAAACTTAGAAAAGCTGATCTATACCAAATCATAAAGGATGATCCACTGAAGCTAATTAGTTTGGCTTCAAAACTGAAACAGAATACTGATTTACAGTTATTGCGTGATGACCCAAGTAAACATTTGGGGAAAACAACATTCTTGCTGAAGTTGGGATATGCTGAGAACTCTGAGGAGATGACAAAAGCAATAAAAAGATTCCGAGGGAGAGGTGATCAATTACAAGAGAGGTTTGATTGCCTAGTTGAAGCTGGTTTGGACTATAACATTGCAATCAAAATGATAAAATGTGCTCCTATGATTCTAAACCAGAACAAAGGTGTGATTCAAAAGAAGATTGATTTCTTAAGAAACATTTTAGGTTACCCATTAGATTGCGTCGTTGCATTTCCAGCATACTTGTGCTATGATTTAGAGAGAATCATGCTCAGATTTTCAATGTATGCTTGGGTGGCAGAAAGGAAAGCCGTAAAACCTATGATGGCCTTGAGCACTATCCTCGCATCCTCTGATGAAAAGTTTGTAAAATACATTGTGAATGCACATCCTGAAGGTCCAATCATCTGGGATGATCTAAAGAAGTTATTGCTAAAAGATAAGAGCCAACTCTCCCCTTAA 1758 0.3851 MISHLNQNHPFLFSHGSYKKPLSTQNPFPLSPKVPIFPSSTAIPVLQVSRVQSIHSHFSVKRLSRQVKGKVQDVLLDYLHSSRGYSFVDAEFISKNSPCFVQGLVSEFHGQDDDVATCLRKWLWYNPINEFEPFFESLGISPHELHLFLPRGMMYLSDDHVLLANFHALSNYGVPRNRIGKIYREAKEVFEYPNGLLLSKFRGYENLGLSRSMVIKLVVSCPSLLVGETSVELAMVLYWLKKIGIGHDWIGNYMSCLKTYYPRRMLDAMEFLHKVGYSEEQMHNLFKENPALLLEGLEKKLFVFLSLAFKLGLNKNMMYSCFVEYPHILINKCAKNLLGVIGFLRYVGMDIDAISLILSNHMHLLSSHPLKGPKVVCLQLKLRKADLYQIIKDDPLKLISLASKLKQNTDLQLLRDDPSKHLGKTTFLLKLGYAENSEEMTKAIKRFRGRGDQLQERFDCLVEAGLDYNIAIKMIKCAPMILNQNKGVIQKKIDFLRNILGYPLDCVVAFPAYLCYDLERIMLRFSMYAWVAERKAVKPMMALSTILASSDEKFVKYIVNAHPEGPIIWDDLKKLLLKDKSQLSP 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00835 585 SMART mt_12 504 535 IPR003690 GO:0003690|GO:0006355
Phco3g00835 585 SMART mt_12 319 350 IPR003690 GO:0003690|GO:0006355
Phco3g00835 585 SMART mt_12 180 210 IPR003690 GO:0003690|GO:0006355
Phco3g00835 585 SMART mt_12 472 503 IPR003690 GO:0003690|GO:0006355
Phco3g00835 585 SMART mt_12 283 310 IPR003690 GO:0003690|GO:0006355
Phco3g00835 585 SMART mt_12 215 246 IPR003690 GO:0003690|GO:0006355
Phco3g00835 585 Gene3D Transcription termination factor 3, mitochondrial 303 566 IPR038538 -
Phco3g00835 585 Gene3D Transcription termination factor 3, mitochondrial 121 301 IPR038538 -
Phco3g00835 585 PANTHER CGI-12 PROTEIN-RELATED 76 560 IPR003690 GO:0003690|GO:0006355
Phco3g00835 585 Pfam mTERF 452 554 IPR003690 GO:0003690|GO:0006355
Phco3g00835 585 Pfam mTERF 269 407 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00835 Phco-Chr3 6940213 6941970 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Phco3g00835 mTERF 1.9e-12 No_clan