Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00791 ATGACTACTACAGCCAAGAAGTACTTCTTCAAAATCTTCTTTCCAGAGAAACACTCTGAAAGAATGGTTATTCCAAGTTCTTTTGTGAAGTCTAGACGCTTACGAAGAAGGAGAATACCTGAAGATATCATCCTCAGAAATGTTAGTGGGGGGGTTTGGTGTGTCAAAACTCGTCTCGTTGGACACAAAATCTACTTTCAAGAGGGTTGGAAGGTTTTTCAAGCAGAAAACTGTATAGGAAAAGCAGATTTTCTACTTTTTAAGTATGATGGGACCAATGTATTCAAGGTGGTAATTCTTGAACAATCATCACGCTGTGAAAGGAGAGAAGTTGAAGAAGATGAGGTGATAGATATTACCGAAGAGGAAGAGAATGAAAAAACTGAGGACTATGTGATGGAGGACGAGGAAGATAGTGATTATGAGAATGAGTATTATGAGGATGAAGATGACAATTATACAGAAATGGAAGAAGAGAGTGAAGAAGAACACAAGAAGAGTCAAAATCATCATAGTAGAGCCAGCAATACAGGTCCTCATCTTGAAGACTGTGAATTTGATCCACAAATGTATATTCAGCCAGAAAATCCATACTTTGAAGCAAAACTGTATAAAAATAGACCCAACGAATTGCATATTCCAGCAAATGTCTTGAGAGACTCGTCGCTTACTTTTCCAGAAGAGATCACCCTTTCACGTTGCAAATGCTTCCAACGTGAGGATATTCAAACAAATGAATTACGAGACAATCATTTGGGCTTTTCACGACAGACACCAATGTATTCGGAAGTAACAAAAGTGTCTGAGTGGCAAGATGGTCGAGTATGTATAAAAGGATGGGCAAACTTTTGTGCAAAGAACAAGATCAAGGAAAATGATGTATGCATCTGTGAGATTGAATCAGGGAAACACCAAATAGTAAGAACACTTCAGGTGCACGTGCTTGGTGCTAGGAACGAATGA 963 0.3863 MTTTAKKYFFKIFFPEKHSERMVIPSSFVKSRRLRRRRIPEDIILRNVSGGVWCVKTRLVGHKIYFQEGWKVFQAENCIGKADFLLFKYDGTNVFKVVILEQSSRCERREVEEDEVIDITEEEENEKTEDYVMEDEEDSDYENEYYEDEDDNYTEMEEESEEEHKKSQNHHSRASNTGPHLEDCEFDPQMYIQPENPYFEAKLYKNRPNELHIPANVLRDSSLTFPEEITLSRCKCFQREDIQTNELRDNHLGFSRQTPMYSEVTKVSEWQDGRVCIKGWANFCAKNKIKENDVCICEIESGKHQIVRTLQVHVLGARNE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00791 320 SMART B3_2 9 103 IPR003340 GO:0003677
Phco3g00791 320 PANTHER B3 DOMAIN-CONTAINING 4 302 - -
Phco3g00791 320 CDD B3_DNA 7 100 IPR003340 GO:0003677
Phco3g00791 320 ProSiteProfiles B3 DNA-binding domain profile. 7 103 IPR003340 GO:0003677
Phco3g00791 320 MobiDBLite consensus disorder prediction 114 158 - -
Phco3g00791 320 SUPERFAMILY DNA-binding pseudobarrel domain 6 102 IPR015300 -
Phco3g00791 320 MobiDBLite consensus disorder prediction 111 184 - -
Phco3g00791 320 Coils Coil 146 166 - -
Phco3g00791 320 Gene3D - 1 106 IPR015300 -
Phco3g00791 320 MobiDBLite consensus disorder prediction 159 180 - -
Phco3g00791 320 Pfam B3 DNA binding domain 9 99 IPR003340 GO:0003677
Phco3g00791 320 SUPERFAMILY DNA-binding pseudobarrel domain 192 313 IPR015300 -
Phco3g00791 320 Gene3D - 185 318 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00791 Phco-Chr3 6557681 6559395 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco3g00791 B3 4.7e-12 CL0405