Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00790 ATGGAGAACAAGAACCTCACCTCAAAATGTTTTTACTGTAAGCATTCTCAAAATGGGGTGAGGAATGCAGCTGATAGTTATTTTTTCCGCTTGTTTTTCTTTTTGTGGTTTATTGTGGTGCCAGTGTTTGGTGAAGAGCGTTGGGATGGAGTTGTTGTCACACAGTCAAACTTCCTCGCACTTCAGGCATTCAAGCAGGAGTTGGTTGATACTGAAGGCTTCCTGAGAAGCTGGAATGACAGTGGCTATGGAGCTTGTTCTGGAGGTTGGGTTGGTATCAAGTGTGCCCAGGGACAGGTTATTGTTATCCAGCTTCCATGGAAGGGGTTGAAGGGGCATATCACCGAGAGGATTGGCCAACTTCAGGGGCTTAGAAAGATTAGTCTCCACGATAACCAAATTGGTGGTTCGATCCCTTCAGCACTGGGACTTCTTCTCAATCTAAGAGGGGTTCAACTCTTCAACAATAGGTTCACAGGGTCCATCCCTCCTTCATTAGGTTCATGTCCTTTGCTTCAGTCTTTAGACCTCAGTAACAATCTGCTCAGCGGGACAATCCCAATGAGCCTTGGGAATGCCACTAAGCTTTATTGGCTTAACTTGAGTTTTAATTCCTTCTCTGGCCCAATACCAACTAGCTTAACTCGCTTAACTTCTCTCACCTACATATCTCTTCAACACAATAATCTCTCGGGCTCTATTCCTAACTCATGGGGTGGTAGCTTGAGGAACCACTTCTTTCGGCTCCAAAATCTTATCCTAGATCATAACTTCTTGAGTGGAAGCATTCCTGCTTCTTTGGGTATCTTGAGCGAACTCACAGAAATTTCTCTTAGCCATAACCAGCTTAGAGGACCTATCCCAAATGAAATAGGAAGCCTTTATAGACTTAAGACTGTAGATTTTTCTAGTAATGCATTGAATGGAAGCTTGCCCACCACTCTCTCTAATGTATCCTCACTCACTCTCTTGAATGTAGAGAACAACCGCCTTGGCAATCAAATCCCAGAAGCTTTAGGCAGATTGCACAATCTATCTGTTCTAGTTCTTAGCAGAAACCAATTCAGTGGCCTCATTCCTCAAAGTATTGGAAACATTTCAAAGCTTACACAGCTTGATTTGTCACTGAATAATCTCAGTGGAGAAATTCCAGCATCCTTTGAAGATCTGCGTGGTCTTAATTTCTTCAACGTTTCTCATAACAACCTCTCTGGTCCAGTTCCAACCCTACTTGCTCATAAATTTAATTCAAGTTCTTTTGTGGGAAATATTCAACTATGTGGATATAGCCCTTCTACCATATGTCCCTCGCCAGCACCTTTTGGTTCACCCACAGAAATATCAGATAACCATCGACACAAGAAACTAGGCACCAAAGACATAATTCTCATAGTAGCAGGACTGCTCCTTGTAGTCCTGATAACACTTTGCTGCATTCTGCTATTCTGCCTGATCAGAAAAAGAACAGCATCAAATGCAGAGGGTGGCCAGGCCACAGGGAGAGCATCTGCATCTGCTGCCAGGACAGAAAAAGGAGTCCCTCCAGTGGCAGCTGAAGCTGAAGCGGGTGGTGGTGAGGCTGGAGGTAAACTAGTCCATTTTGATGGACCACTGGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCAGAGATAATGGGAAAGAGTACTTATGGAACTGTGTACAAGGCTACATTAGAGGATGGGAGTCAAGCGGCAGTTAAACGATTGAGGGAAAAGATTACGAAAGGTCAGAGAGAATTCGAATCTGAAGTTAGTGTTATAGGAAGAATTCGACACCCAAATCTTTTGGCATTGAGAGCCTATTACTTGGGACCCAAAGGAGAAAAGCTTCTAGTGTTTGATTATATGCCTAAGGGAAGTCTTGCTTCTTTCCTACACGCTCGTGGGCCTGAAACAGCCATTGATTGGCCAACAAGGATGAGAATAGCACAGGGGATGGCTCGTGGCTTGTTACACCTACATTCCAATGAGAATATTATACATGGGAACCTTACGTCCAGCAATGCGCTGTTGGATGAGAATACGAATGCTAAAATAGCTGATTTCGGCCTTTCTCGGTTGATGACAACTGCTGCTAATTCAAACGTGATTGCCACTGCTGGGGCATTGGGATACCGAGCACCTGAGCTCTCGAAGCTTAAGAAAGCCAACTCAAAAACCGATGTATACAGTCTTGGTGTCATCTTGTTAGAACTCCTAACGGGGAAGCCACCTGGTGAGGCTTTGAATGGCGTGGATTTACCTCAGTGGGTTGCCTCCATTGTCAAAGACGAGTGGACAAATGAAGTTTTCGATGTAGAGTTGATGAGAGATGCTTCAACATATGGCGACGAAATGCTAAACACGTTGAAGCTTGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGTTCAGCAAGTCCTTCAGCAGCTTGAAGAGATATCAGCCAGTTCGGGTGATGATGGAGCCATCCCTTCGACAAGCGAATGA 2502 0.4452 MENKNLTSKCFYCKHSQNGVRNAADSYFFRLFFFLWFIVVPVFGEERWDGVVVTQSNFLALQAFKQELVDTEGFLRSWNDSGYGACSGGWVGIKCAQGQVIVIQLPWKGLKGHITERIGQLQGLRKISLHDNQIGGSIPSALGLLLNLRGVQLFNNRFTGSIPPSLGSCPLLQSLDLSNNLLSGTIPMSLGNATKLYWLNLSFNSFSGPIPTSLTRLTSLTYISLQHNNLSGSIPNSWGGSLRNHFFRLQNLILDHNFLSGSIPASLGILSELTEISLSHNQLRGPIPNEIGSLYRLKTVDFSSNALNGSLPTTLSNVSSLTLLNVENNRLGNQIPEALGRLHNLSVLVLSRNQFSGLIPQSIGNISKLTQLDLSLNNLSGEIPASFEDLRGLNFFNVSHNNLSGPVPTLLAHKFNSSSFVGNIQLCGYSPSTICPSPAPFGSPTEISDNHRHKKLGTKDIILIVAGLLLVVLITLCCILLFCLIRKRTASNAEGGQATGRASASAARTEKGVPPVAAEAEAGGGEAGGKLVHFDGPLAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQAAVKRLREKITKGQREFESEVSVIGRIRHPNLLALRAYYLGPKGEKLLVFDYMPKGSLASFLHARGPETAIDWPTRMRIAQGMARGLLHLHSNENIIHGNLTSSNALLDENTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANSKTDVYSLGVILLELLTGKPPGEALNGVDLPQWVASIVKDEWTNEVFDVELMRDASTYGDEMLNTLKLALHCVDPSPSARPEVQQVLQQLEEISASSGDDGAIPSTSE 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00790 833 SMART LRR_typ_2 342 365 IPR003591 -
Phco3g00790 833 SMART LRR_typ_2 121 145 IPR003591 -
Phco3g00790 833 SMART LRR_typ_2 318 341 IPR003591 -
Phco3g00790 833 SMART LRR_typ_2 366 389 IPR003591 -
Phco3g00790 833 SMART LRR_typ_2 270 294 IPR003591 -
Phco3g00790 833 SMART LRR_typ_2 217 240 IPR003591 -
Phco3g00790 833 SUPERFAMILY L domain-like 94 431 - -
Phco3g00790 833 PRINTS Leucine-rich repeat signature 172 185 - -
Phco3g00790 833 PRINTS Leucine-rich repeat signature 270 283 - -
Phco3g00790 833 Gene3D Transferase(Phosphotransferase) domain 1 625 827 - -
Phco3g00790 833 MobiDBLite consensus disorder prediction 495 522 - -
Phco3g00790 833 Gene3D Ribonuclease Inhibitor 212 310 IPR032675 -
Phco3g00790 833 FunFam Leucine-rich repeat receptor-like kinase 56 168 - -
Phco3g00790 833 SUPERFAMILY Protein kinase-like (PK-like) 551 818 IPR011009 -
Phco3g00790 833 Gene3D Ribonuclease Inhibitor 311 437 IPR032675 -
Phco3g00790 833 Pfam Leucine rich repeat 344 403 IPR001611 GO:0005515
Phco3g00790 833 Pfam Leucine rich repeat 171 230 IPR001611 GO:0005515
Phco3g00790 833 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 169 242 - -
Phco3g00790 833 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 243 438 - -
Phco3g00790 833 CDD STKc_IRAK 553 818 - -
Phco3g00790 833 FunFam Pollen receptor-like kinase 1 624 828 - -
Phco3g00790 833 Pfam Leucine rich repeat N-terminal domain 59 95 IPR013210 -
Phco3g00790 833 Pfam Protein tyrosine and serine/threonine kinase 550 815 IPR001245 GO:0004672|GO:0006468
Phco3g00790 833 Gene3D Phosphorylase Kinase; domain 1 553 624 - -
Phco3g00790 833 Gene3D Ribonuclease Inhibitor 55 211 IPR032675 -
Phco3g00790 833 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 248 818 - -
Phco3g00790 833 FunFam Leucine-rich repeat receptor-like protein kinase 532 623 - -
Phco3g00790 833 ProSiteProfiles Protein kinase domain profile. 547 818 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00790 Phco-Chr3 6552862 6555461 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco3g00790 PK_Tyr_Ser-Thr 3.7e-40 CL0016