LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco3g00786	ATGGTGCAAAGAAAAAGGCGATTAGATCAACTAAAGCATCCTTTCAATTCTCACCCCTTTGAAGCAGTTGCCTTTGGCTCATGGCAAGCTGTGGAGTTTATAAAGATTGAGGCAGGAATCCTGTCTATGCATTTTGTAGATAATCATTATATGACTATGGAGAAAGGACCCTTGTCAGATATTAGGATAAGTTCAAGGAAAGCTACTTTATCTGATTGCTCCCGTTTTCTGCGTCCTGGAATTGACATATGTGTGCTATCTGCCCCTCAACAATCTAATGATTCAGATGCAATTGTTATTGACCCTGTCTGGACTGATGCTAAAATAAGCTCTGTACAAAGAAAACCTCATGACTCTGAGTGCTCATGTCAGTTTTATGTCAACTTCTATGTTCATCAAGGTTCACTTGGTGCAGAGCTAAGAACTCTTAGCAAGGAGATTAAAGTAGTTGGAATCAAACAAATATCCATCCTCCAGAAACTTGAAAATACTCCTTGTGAAGATCAGCACTACCGGTGGGCATCATCAGAGGACTGTTCCATTATATCACACACTAAATTGCTTTTGGGAAAAGTGTTATGTGATCTTTCATGGTTAGTTGTTGCCTCAGCTTTAAAGAAGATTTCATTTTGCTTAAGATGTCTAGAAGAAAAGCTAGTGTATCAAATTTTGGGAAGAGATACTGTTAGCACTTCATTGAATAAAGATTTTCACATTGATGTTGTGAATTTCAGAACAGAAAGTGGCATGTTAGTACCCTTTGTTTCTCAAGTAGCTACACCAGTAACTAAGAAGATTGATCATGTACAGGAGTCCCATGAAGATGAAGTATCACTATCTTATAGTGTTGAGGGCTTGCGGCGTTCTAAGCGTCGGAATGTACAACCAGAGCGTTACCTTGGTTGTGATAATGTTGCTTCCGAGATTGATGTTGGTTCTTTCAGAAACAGACCACCAGTGAAGATAGACACGTGGAAAGATGAAGACGACCAAGAACTACATATACCATTAGCATGCCTGTTTGGTTTGCAGAAGAACTTTCTAGAAGAAGTTACTGATAATCATCAAAAGAAGGCAAGTACCTGCCGGGAGCTTGTGATGTATAAGAGGAGAATGGCCAAGAACCAGGAGGTAAAGTCAGGAGAAAATTATGAGAATGAAGATCAAAATCGACTTGCTATTATTCCTATTCCTGATCAAGATGATCCGCTACTTGTTGAGCATTGTGATGATTTAGATGACAAGGTTACTAGAAGTTATGGTCATGAATCCCCTGAACATTATTCCAAATATTATCATCTAACTAGTACCCCCAATAAATCAACCAGGAAAGATGATAAATTTTTACCTTTTGAGCCAAATAACCATCCTTCAATGTCAGATGATGCAGAAAAGAATGATGATTTGTCATTGAGATATCACTATAGTTATGGTGTCCCTAAGTCACAGAGGAAGAGTTTATGTGGTTTGGATGATATAGTGGATCTTGGAAATAAATGGGAAGGGATGAGACCCAGTAAAGGAGTTCAAAGGAAAAAATATCATGGAGCATATTCAAGGAGTAGAGATCATGGAGAAGGGAAAAGATACAACTATAAAGACAGAACCTTAAATGCAGCTGCCTACAAGGATTTGATAAATTCGTACTTAAAGAATATTAATACAAAACCTACTCAAGAAGAACCATCTATCACTGACCAGTGGAAGGAAAACAACACAACTAGTAGCATTGGGCAAAAGACGGGAACAGCAACCCTTGATGAAGAGGGTGCAGAAGAAGTATCTGAAATGGATATGTTGTGGAGAGAACTGGAAGTTTCATTGGCGTCATGCTATCTAGAAGAGGATTCAAATGCTGCTTTTATCACTGACGCTGCGGAAAAGCCGAATGAAGGCTGTCCACATGATTTCAGAATGAATGAAGAAATTGGAATTTACTGCTATAGATGTGGCTTAGTGAGCACTGAGATCAAATATATTACGCCACCGTTTATTCAACATTCGGCGTGGCACCAAGAGGAGAAGCACAGTGCTGAAGAAGATTCACGAACCAGGGTTGATGAGGATGATGACTTGGATATTTTCCCAGCCCTAGATTCTCCTGAGGGACCTGTGTCTCAAGAAAATGATAACGTTTGGGCATTGATTCCCGAACTTAGAATAAAGTTGCATGCTCATCAGAAGAAAGCCTTTGAGTTTCTTTGGCAAAACATTGCAGGGTCCATGGAACCCAGACTTATGGAAGCAACGTCCAAAAGAATAGGTGGCTGTGTGGTATCTCATACTCCTGGTGCTGGAAAAACTTTTCTCATCATTGCTTTTCTTGTGAGCTACTTGAAGTTATTCCCAGGGAAGAGACCTCTTGTCCTTGCTCCAAAAACAACCCTCTATACTTGGTACAAAGAATTTATTAAGTGGGATATTCCTATACCAGTGTATCTGATTCATGGTCGTAGAACATACCGGGTATTCAAGCAGAAATCACCTGTTGTTCTTCCTGGAGTTCCCAAGCCCACTGATGATGTCAAGCATGTTTTGGATTGTCTTGAGAAGATACAAAAATGGCATTCACAACCGAGTGTTCTAATAATGGGTTACACTTCATTTTTAACATTGATGCGTGAGGATTCAAAGTTTGCACACAGAAAATACATGGCTAAAGTACTGAGGGAAAGCCCAGGGATCATGGTACTGGATGAAGGGCATAATCCCAGAAGCACTAAATCAAGGTTGAGAAAGGTTTTGATGAAAGTACAAACAAAATTGAGAATACTGCTTTCTGGTACATTGTTCCAGAACAATTTCTGTGAATACTTTAATACTTTGTGCTTGGCAAGACCAAAGTTTATTCATGAAGTACTGAAAGCATTAGACCCCAAATACAGGAGAAAAGGGAAAGTGGCAAAAAAGGCAAGTCATTTATTAGAGTCACGGGCTAGAAAATTCTTCTTAGACAAAATTGCTAAGAAGATCGACTCTGGTAAAGGTAGGGAGAGGCAGCAGGGTCTAAAGATGTTGAGAAATGTGACAAATGGTTTCATAGATGTTTATGAAGGTGGGAGTTCTGACGGTCTACCTGGTTTACAAATTTACACATTGTTAATGAATTCAACTGATACACAACATGAGATTTTGCATAAACTGCACAAGAAAATGGCCCAGTGCAATGGTTATCCTCTGGAATTAGAGCTTTTGATAACTCTTGGTTCAATACATCCCTGGCTGGTCAAAACGGCAGTATGTGCTGAGAAGTTTTTCTCTTCAGAGCAATTGATGGAGCTAGAAAAATGCAAATTTGATCTAAAAATAGGGTCCAAAGTAAGATTTGTTTTGAGCCTTATCTACCGTGTTGTGAGAAAGGAGAAGGTTCTTATATTTTGCCACAACATTGCACCTGTGAAGCTATTTGTGGAGTATTTTGAGAAGTACTTTGGATGGCTAAGAGGTAAGGAAGTGTTGGTTCTAACTGGAGAATTAGAGCTCTTTGAAAGGGGTAGAGTAATGGATAAGTTTGAGGAACCTGGTGGAGTAGCAAAGATACTCCTTGCTTCCATTACAGCTTGTGCTGAAGGCATTAGTTTGACAGCAGCTTCTCGAGTTATCATGTTGGACTCAGAGTGGAACCCTTCAAAAACAAAGCAGGCCATTGCCCGGGCTTTTCGGCCTGGTCAGCAGAAAGTTGTTTATGTGTATCAGCTCTTGGTGACAGGTTCATTGGAGGAAGATAAGTACAGAAGAACCACTTGGAAAGAGTGGGTGTCAAGCATGATCTTCAGTGAAGCCTTTGTGGAGGACCCTTCTCAGTGGCAAGCTGAGAAGATTGAAGATGATATACTCAGAGAAATGGTTGCTGAAGACAGGTCTAAATCATTCCACATGATCATGAAGAATGAAAAAGCTTCTTCTACCAACAAATAA	3918	0.3977	MVQRKRRLDQLKHPFNSHPFEAVAFGSWQAVEFIKIEAGILSMHFVDNHYMTMEKGPLSDIRISSRKATLSDCSRFLRPGIDICVLSAPQQSNDSDAIVIDPVWTDAKISSVQRKPHDSECSCQFYVNFYVHQGSLGAELRTLSKEIKVVGIKQISILQKLENTPCEDQHYRWASSEDCSIISHTKLLLGKVLCDLSWLVVASALKKISFCLRCLEEKLVYQILGRDTVSTSLNKDFHIDVVNFRTESGMLVPFVSQVATPVTKKIDHVQESHEDEVSLSYSVEGLRRSKRRNVQPERYLGCDNVASEIDVGSFRNRPPVKIDTWKDEDDQELHIPLACLFGLQKNFLEEVTDNHQKKASTCRELVMYKRRMAKNQEVKSGENYENEDQNRLAIIPIPDQDDPLLVEHCDDLDDKVTRSYGHESPEHYSKYYHLTSTPNKSTRKDDKFLPFEPNNHPSMSDDAEKNDDLSLRYHYSYGVPKSQRKSLCGLDDIVDLGNKWEGMRPSKGVQRKKYHGAYSRSRDHGEGKRYNYKDRTLNAAAYKDLINSYLKNINTKPTQEEPSITDQWKENNTTSSIGQKTGTATLDEEGAEEVSEMDMLWRELEVSLASCYLEEDSNAAFITDAAEKPNEGCPHDFRMNEEIGIYCYRCGLVSTEIKYITPPFIQHSAWHQEEKHSAEEDSRTRVDEDDDLDIFPALDSPEGPVSQENDNVWALIPELRIKLHAHQKKAFEFLWQNIAGSMEPRLMEATSKRIGGCVVSHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSPVVLPGVPKPTDDVKHVLDCLEKIQKWHSQPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGIMVLDEGHNPRSTKSRLRKVLMKVQTKLRILLSGTLFQNNFCEYFNTLCLARPKFIHEVLKALDPKYRRKGKVAKKASHLLESRARKFFLDKIAKKIDSGKGRERQQGLKMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNSTDTQHEILHKLHKKMAQCNGYPLELELLITLGSIHPWLVKTAVCAEKFFSSEQLMELEKCKFDLKIGSKVRFVLSLIYRVVRKEKVLIFCHNIAPVKLFVEYFEKYFGWLRGKEVLVLTGELELFERGRVMDKFEEPGGVAKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVAEDRSKSFHMIMKNEKASSTNK	1305

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco3g00786	1305	CDD	DEXHc_ATRX-like	723	953	-	-
	Phco3g00786	1305	MobiDBLite	consensus disorder prediction	433	465	-	-
	Phco3g00786	1305	Pfam	SNF2-related domain	736	991	IPR000330	GO:0005524\|GO:0140658
	Phco3g00786	1305	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	748	948	IPR014001	-
	Phco3g00786	1305	MobiDBLite	consensus disorder prediction	507	530	-	-
	Phco3g00786	1305	Pfam	Helicase conserved C-terminal domain	1106	1222	IPR001650	-
	Phco3g00786	1305	SMART	ultradead3	719	953	IPR014001	-
	Phco3g00786	1305	MobiDBLite	consensus disorder prediction	557	590	-	-
	Phco3g00786	1305	PANTHER	SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED	53	1301	IPR044567	GO:0080188
	Phco3g00786	1305	CDD	SF2_C_SNF	1098	1234	-	-
	Phco3g00786	1305	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	1023	1285	IPR027417	-
	Phco3g00786	1305	Gene3D	-	1028	1305	IPR027417	-
	Phco3g00786	1305	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	677	961	IPR027417	-
	Phco3g00786	1305	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	1110	1270	IPR001650	-
	Phco3g00786	1305	Gene3D	-	703	989	IPR038718	-
	Phco3g00786	1305	MobiDBLite	consensus disorder prediction	557	583	-	-
	Phco3g00786	1305	SMART	helicmild6	1138	1223	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco3g00786	Phco-Chr3	6515942	6520905	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Phco3g00786		SNF2_N	1.2e-16	CL0023

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco3g00786	3	6515942	6520905	Phco3g00786	3	6515942	6520905	ECH
	Phco2g02811	2	57488885	57492002	Phco3g00786	3	6515942	6520905	PCT