Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00782 ATGGGTGGAAATCCCCCTTGTGCGTCATGCAAATTGCTGAGACGCAAGTGCACAAAAGATTGCATCTTCGCTCCTTATTTTCTGTCTGATGAACCTCAAAAGTTTGCTATAGTTCATAAGGTTTTTGGTGCTAGCAATGTTAGCAAAATGTTGCAGGAACTTCCAGTTGAGCAGAGAGCAGATGCAGTGAGTAGTCTAGTGTATGAGGCAAGTGCTAGAGTGAGGGACCCTGTGTATGGTTGTGTTGGAGCCATATCTTATTTGCAGAATCAAGTTGCTGATCTTAAAATGCAGCTTGCAGTTGCTCAAGCAGAGATACAATGCATTCAGATGGAAAAGAAGCCACTGATGGTACCCTCAGAAACTGATATACACAAGTCTGATCATCTTCAAAATAATTTCCCTCAGTTTCTTGATTTTGGTACTTCTAACAGTAACAGTGTAGTTCATCATCCCCCTAATTATCTTAGACCATAG 477 0.413 MGGNPPCASCKLLRRKCTKDCIFAPYFLSDEPQKFAIVHKVFGASNVSKMLQELPVEQRADAVSSLVYEASARVRDPVYGCVGAISYLQNQVADLKMQLAVAQAEIQCIQMEKKPLMVPSETDIHKSDHLQNNFPQFLDFGTSNSNSVVHHPPNYLRP 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00782 158 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Phco3g00782 158 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 128 - -
Phco3g00782 158 Coils Coil 85 112 - -
Phco3g00782 158 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00782 Phco-Chr3 6477313 6478038 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phco3g00782 LOB 1.7e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02802 2 57420199 57420999 Phco3g00782 3 6477313 6478038 ECH
Phco3g00782 3 6477313 6478038 Phco3g00782 3 6477313 6478038 ECH
Phco2g02802 2 57420199 57420999 Phco3g00782 3 6477313 6478038 PCT