Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00756 ATGACGGGCGGTGGCGACGATCACGTGAAGGGCTCGTGGAGTCCTAAGGAGGACACGACGCTAATGAAATTGGTGAAGGAGCACGGCCCGCGGAACTGGTCCATGATCAGCAGCGGCATTCCGGGGCGCTCCGGCAAGTCCTGCCGGTTGCGATGGTGCAACCAGCTCAGCCCGGAGTTGAAGCATCGCCCCTTCAGTCCGATGGAGGACGAGATCATCATCAAGGCTCACGCTGTTCACGGGAATAAGTGGGCCACCATCTCGCGCCTCCTCCCTGGCCGCACCGACAACGCCATTAAGAACCACTGGAACTCCACCCTCCGGCGCCGTAGCACGACGGGGCAGTCCTCGTCGTCGTCGGCATCGCCAAGCACCAAGCGGCCTTCTCCGTCGGAGTTGTGCTATCCTCTCAAGAAACAGCGTGCGGAGAAGGAAAGCGTGGAAGAGTGCATGGCGATTCCCCCTATGAAGCCGTTGAGTCTTTTTCCGTCTGGGGAAAAATCGGAGGGAGAAATGATGGAAGAGGAAGAAAATGAAAAAGAGGAAGAAGAAAGAGTAGGAGAAGAGTTTGAAGTGAATAATATTAACACGGCTCCGGATCAAGATTACTTTCTGCAGATGATGCAGCAGATGATAGCTGATGAGGTTCGGAATTATGTTGATAGTTTGCGTCATCAAAGGCAACATGAAATCTTTCATCCTGGGTTAAAGTTTCATCCCAAATAA 726 0.5358 MTGGGDDHVKGSWSPKEDTTLMKLVKEHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPELKHRPFSPMEDEIIIKAHAVHGNKWATISRLLPGRTDNAIKNHWNSTLRRRSTTGQSSSSSASPSTKRPSPSELCYPLKKQRAEKESVEECMAIPPMKPLSLFPSGEKSEGEMMEEEENEKEEEERVGEEFEVNNINTAPDQDYFLQMMQQMIADEVRNYVDSLRHQRQHEIFHPGLKFHPK 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00756 241 Gene3D - 63 132 - -
Phco3g00756 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 56 IPR017930 -
Phco3g00756 241 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 10 168 - -
Phco3g00756 241 MobiDBLite consensus disorder prediction 156 188 - -
Phco3g00756 241 SUPERFAMILY Homeodomain-like 8 103 IPR009057 -
Phco3g00756 241 CDD SANT 64 107 IPR001005 -
Phco3g00756 241 FunFam MYB transcription factor 10 61 - -
Phco3g00756 241 MobiDBLite consensus disorder prediction 101 129 - -
Phco3g00756 241 ProSiteProfiles Myb-like domain profile. 5 56 IPR001005 -
Phco3g00756 241 MobiDBLite consensus disorder prediction 101 133 - -
Phco3g00756 241 SMART sant 61 109 IPR001005 -
Phco3g00756 241 SMART sant 9 58 IPR001005 -
Phco3g00756 241 FunFam Transcription factor MYB44 64 110 - -
Phco3g00756 241 Gene3D - 9 61 - -
Phco3g00756 241 Pfam Myb-like DNA-binding domain 64 106 IPR001005 -
Phco3g00756 241 Pfam Myb-like DNA-binding domain 10 56 IPR001005 -
Phco3g00756 241 Coils Coil 165 193 - -
Phco3g00756 241 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Phco3g00756 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Phco3g00756 241 CDD SANT 12 54 IPR001005 -
Phco3g00756 241 MobiDBLite consensus disorder prediction 170 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00756 Phco-Chr3 6265169 6265894 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco3g00756 Myb_DNA-binding 1.5e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00756 3 6265169 6265894 Phco3g00756 3 6265169 6265894 ECH