Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00755 ATGGAAAGTTACCACTATTCTGGGTGGCCTCTTGCCACCAACATGGCTCAGTGCAACTCTGCACCAAACAGTGATCAATTATCCCCTTTTTCAGTTCCAACAACTCAAACACTCCCTCTTGCTTCTGACCCTGCCTCTCTTCAGTTTAGTGAGTTCCCTTTGTGGCCTGCAACCATTGCAGAAGATAGAGTTGCTAATGCTTCAAAGAGTCACAGCCAAGCAGAGAAAAGGCGCAGGGACAGGATCAATGCACAGCTTGCAACTCTCAGAAAACTCATTCCCAAGTCTGATAAGATGGACAAAGCAGCATTACTAGGGAGTGTGGTAGACCATGTGAAAGATCTAAAGCGAAAAGCCATGTGTGTGAGCAAAGCCATTACTGTTCCAACTGAAACTGATGAAGTAAAAATTGACTTCCACGAAGCTAAAGAAGAAAGGTACACAAAAGTGAAGATATTGAAGGAAAACATCATAATCAAAGCTTCTGTTTGCTGTGATGATCGACCAGAAGTGTTCCCTGAGCTCATCCAAGTCCTCAAAGGGTTGAGACTCACAGCAGTTAAGGCTGACATAGCTAGTGTGGGTGGCAGAATCAAAAGCATACTGGTTCTTTGTTCAAAGGACAGTGAAGAGAACAGTGTTTGCCTTAGCACTCTCAAACAATCACTTAAATCAGCTGTCAACAAAATTGCTTCGTTATCCGTGGCCACTAATTGTCCCACTAGAAGTAAGAGGCAGAGGTTCTTCTTCCCTTCTCACTACGTACAACCATAA 774 0.438 MESYHYSGWPLATNMAQCNSAPNSDQLSPFSVPTTQTLPLASDPASLQFSEFPLWPATIAEDRVANASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLKRKAMCVSKAITVPTETDEVKIDFHEAKEERYTKVKILKENIIIKASVCCDDRPEVFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSEENSVCLSTLKQSLKSAVNKIASLSVATNCPTRSKRQRFFFPSHYVQP 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00755 257 Gene3D - 60 122 IPR036638 GO:0046983
Phco3g00755 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 115 IPR011598 GO:0046983
Phco3g00755 257 PANTHER TRANSCRIPTION FACTOR BHLH30 58 252 IPR045847 GO:0003700|GO:0006355
Phco3g00755 257 SMART finulus 72 121 IPR011598 GO:0046983
Phco3g00755 257 Pfam Helix-loop-helix DNA-binding domain 69 115 IPR011598 GO:0046983
Phco3g00755 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 119 IPR036638 GO:0046983
Phco3g00755 257 CDD bHLH_AtAIG1_like 61 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00755 Phco-Chr3 6256584 6257996 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco3g00755 HLH 7.9e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00755 3 6256584 6257996 Phco3g00755 3 6256584 6257996 ECH
Phco2g02787 2 57312069 57313177 Phco3g00755 3 6256584 6257996 PCT