Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00747 ATGATAAAAGGCCCTCCCATAGGTTTCTTTCTCCCTCATATTTGCTCAATCGAGGTCTTCTCGATTTTTCTCTCTTCAAACAACGACGCTCTCTTGCAACCAACATACACTTCTTGTAGTCCTACTTCCTCTCAAATCCACTACTCAAAAGGAATTTGGGACATGTGTAGTGATTCAAAGAGTAAGCTCTCTTCCCCAAGGCTCGTGATGGAGAATAATCTTCAGAAGCAGAATCTTGATGGTTTCTGCAACTTCTCGGCTTTGCTTGAACTGTCTGCATGCGATGATTTTGAAGGTTTCAAAAGAGAAGTGGATGAGAAGGGCTTAGATGTCAACGAGGCTGGGTTTTGGTATGGCAGAAGGATTGGGTCCAAGAAGATGGGATCTGAAACGAGGACCCCCCTCATGATTGCTTCTTTGTTTGGAAGCACTAGAGTTCTCAAGTATATTCTTGAGGCAGGAACTGTTGATGTGAACAGGGCCTGTGGTTCTGACAGGGCCACTGCTCTCCATTGTGCTGCCGCTGGGGGCTCTGAATCCTCACCCGAGATTGTCAAGCTCTTGCTAGATGCTGGGGCTGATGCTGAATCTCTTGATGCTAGTGGAAACAAGCCGGCTAATCTGGTTGCTCCAGCCTTTGATTCTTCCTCCAAATCCCGGAGGAAGGCCGTGGAGTTGTTCCTCAGGGGTGGTGAAAGAGATGAAGTGATGAGTCAGGAGATGGAGCTGCAGATGTTCTCCGCTCCTTTCTCCGCAAAAGAAGGTGCTGAGAAAAAAGAAGGAAGTGATAAGAAAGAGTATCCTGTTGATATATCCTTGCCAGATATCAACAGCGATGTGTATGGAAGCGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCTTGCTCAAGGGCCTACTCCCATGACTGGACTGAGTGTCCATTTGTTCATCCAGGCGAGAACGCAAGGAGGAGAGACCCAAGGAAATACCCTTATAGCTGTGTTCCTTGCCCTGAATTCCGCAAAGGGGCCTGCCAGAAGGGTGATTCCTGTGAGTATGCTCACGGTGTTTTTGAGTCCTGGCTACACCCTGCCCAGTACAGAACAAGGCTTTGCAAGGACGAGACTGGCTGCAGTAGAAAAGTCTGCTTCTTTGCCCACAAACCTGAAGAGTTACGCCCTGTGTATGCTTCCACTGGCTCAGCTATGCCTTCACCAAAATCCTATTCATCTACTGCACTAGACATGACAGCCATGAGTCCATTGGCTCTCAGTTCCACATCTTTGCCCATGCCAACTGTTTCAACCCCACCCATGTCTCCATTGGCAGCAGCTTCATCTCCCAAGAGTGGAAACTTGTGGCAGAACAAAATAAACCTTACTCCACCATCCCTGCAGCTCCCTGGTAGCCGACTCAAGGCTGCTTTGAGTGCCAGGGATCTGGAGATGGAGATGGAACTGTTCGGTCTAGATAGTCCAGCTCGCCAACAACAGCAGCAGCAGCAGCAGCAACAGTTGATAGAAGAGATTGCTAGGATCTCTTCCCCGTCATTCCGCAACAAGGAATTCAATAGGATTGCTGATTTGAATCCAACCAACCTTGATGACCTGTTAGCCTCTGCTGACCCTTCTGTGTTATCACAACTCCATGGACTTTCTGTGCAGACTTCAACACCCACCCAAAGTGGTCTTCAGATGCGCCAAAACATGAACCACCTTCGTGCGAGTTATCCATCCAACATCCCTTCCTCGCCTGTGAGGAAGCCCTCGGCTTTTGGGTTTGACTCATCAGCTGCTGTGGCAGCTGCAGTGATGAACTCCAGGTCTGCCGCCTTCGCCAAGCGAAGCCAAAGCTTCATCGATCGTGGAGCTGCAATTCACCATCTTGGCCTGTCTTCACCTTCCAACCCTTCCTGCAGGGTGTCCTCTACCCTTTCAGATTGGAGTTCCCCTACTGGGAAACTGGATTGGGGTGTTAACGGAGATGAGCTAAACAAGCTGAGGAGATCTGCTTCATTTGGGTTCAGAAACAATGGGGTAAGTGCTTCCCCCATAGCTCACCCAGAACATGTTGAGCCAGATGTCTCATGGGTTCATTCATTGGTTAAGGATGTTCCTTCTGAGAGGTCGGAGATGTTTGGTGGTGAGAGGCAACAGTATGATCTGAGTAAAGAGATGCTGCCACCATGGGTGGAGCAGCTGTACATAGAGCAGGAGCAGATGGTAGCATGA 2214 0.491 MIKGPPIGFFLPHICSIEVFSIFLSSNNDALLQPTYTSCSPTSSQIHYSKGIWDMCSDSKSKLSSPRLVMENNLQKQNLDGFCNFSALLELSACDDFEGFKREVDEKGLDVNEAGFWYGRRIGSKKMGSETRTPLMIASLFGSTRVLKYILEAGTVDVNRACGSDRATALHCAAAGGSESSPEIVKLLLDAGADAESLDASGNKPANLVAPAFDSSSKSRRKAVELFLRGGERDEVMSQEMELQMFSAPFSAKEGAEKKEGSDKKEYPVDISLPDINSDVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKPEELRPVYASTGSAMPSPKSYSSTALDMTAMSPLALSSTSLPMPTVSTPPMSPLAAASSPKSGNLWQNKINLTPPSLQLPGSRLKAALSARDLEMEMELFGLDSPARQQQQQQQQQQLIEEIARISSPSFRNKEFNRIADLNPTNLDDLLASADPSVLSQLHGLSVQTSTPTQSGLQMRQNMNHLRASYPSNIPSSPVRKPSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGAAIHHLGLSSPSNPSCRVSSTLSDWSSPTGKLDWGVNGDELNKLRRSASFGFRNNGVSASPIAHPEHVEPDVSWVHSLVKDVPSERSEMFGGERQQYDLSKEMLPPWVEQLYIEQEQMVA 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00747 737 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 330 350 IPR000571 GO:0046872
Phco3g00747 737 SUPERFAMILY Ankyrin repeat 81 207 IPR036770 -
Phco3g00747 737 Gene3D - 87 229 IPR036770 -
Phco3g00747 737 ProSiteProfiles Ankyrin repeat profile. 165 200 IPR002110 GO:0005515
Phco3g00747 737 ProSiteProfiles Zinc finger C3H1-type profile. 325 352 IPR000571 GO:0046872
Phco3g00747 737 PANTHER UNKEMPT FAMILY MEMBER 90 699 IPR045234 -
Phco3g00747 737 SMART ANK_2a 130 160 IPR002110 GO:0005515
Phco3g00747 737 SMART ANK_2a 165 197 IPR002110 GO:0005515
Phco3g00747 737 Pfam Ankyrin repeats (3 copies) 128 196 IPR002110 GO:0005515
Phco3g00747 737 SMART c3hfinal6 360 383 IPR000571 GO:0046872
Phco3g00747 737 SMART c3hfinal6 325 351 IPR000571 GO:0046872
Phco3g00747 737 Gene3D - 326 388 - -
Phco3g00747 737 ProSiteProfiles Ankyrin repeat region circular profile. 165 199 - -
Phco3g00747 737 FunFam Zinc finger CCCH domain-containing protein 66 283 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00747 Phco-Chr3 6146583 6149245 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco3g00747 Ank_2 2.2e-08 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00747 3 6146583 6149245 Phco3g00747 3 6146583 6149245 ECH