LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco3g00742	ATGGCTGTGTCCAACGGCGTCGAAGCAGTTTTAGAGTTTCTGCGGAAGAATGGCTTGTCGGAAGCGGAGTCCGCGCTCCGAGAAGACATCATCGAGAACACCGACCTCGGAAACTTCGACTATGAGAAGTTCTTCTTCCCCATGGTCCCGCCGCCGCCGCCAGTCAAAGTCCGATCCTTCTCCCGACCGTCCGAGCTCGCCGCCATGGACGACGACTGCTCCAAATCCAGCTCCGACGAGTTCATCACCATCGGGTCTTCCACTTCTCGCGTCTCTTCTTTAGAATTCGTAAATCCGTATGGAATCCGTTCCTCGTCTCAGACACAGAATGATTCCGAGTCTTCTTCTGAAAGATTATCTCAGTTTGGCACAGCACGTGATTATCACGATTTTGATATGCAAAATGAACCGTATTGGTATAATGAAAAAGATGATGACTATTTCATGACTCCTAGTTTTGAAGGGCCAGATTATTTTGCGTGTCAGAGTGAGGATAAGTTTGTCATGACAGCAGAAACGGAAATCCAACGTGACAATTCTCTGCATCTTGGGTACAACTTTGAAGAATTTCAACTACAGGGGAATAGTAATGGCGGTTACATGGACAAGGCATGCCTCGATAATCATTCCTCTGTAGGGGATGGAACTGTGACTTGTTCAAAAGGGTATTGTCATGTTGATAACAATGACCAGTTTGAAGAGGAATTAGAGGGTAAGGCTGAGAAACCCAGTGTCGCCTGCAGTTGTGAAGTTCCATTTTGCAAAAGCAGTCCTGGTTCGGGAGGTTCTTGCAGTCTGGATCCTACAAACTTCGGCTACCCTAACTTGAAGGAAATCCATCTGAACAATTTTCATTTGAAGGTTGTTGGGGACTTTAACTCTCTTGATTCTACTTCAGAGCTAACTCTGAATCAAAGTTTTGACCACTACACTAAAAACGACAGCAGTAAGAAGTACGAGGGTCCTTACGACTTAACTATTGAAGTTACTGATAAAAATCTACCAAATGGACTTGACACCTCTAAAGCACAAGTTGGTGGAGAATTAGCTGAAGACTGCCAAGATCCAGAGCTTGATGCGGATGGAGAGGATACCACTGATGATGAGCTCTTAAAGTATACTCAAGAGGAAGAATACGAAGTGTTTGATCTGAGAATTATACATAGAAAGAACAGGACTGGATTTGAAGAAAACAAGGAACTTCCGATTGTGCTAAACACAGTCTTGGCTGGAAGGTATTATGTAACAGAGTATCTTGGTTCAGCTGCCTTCAGTAGGGTTGTTCAGGCACATGATCTTCAGACAGGAATAGATGTTTGTTTGAAGATTATTAAAAATGACAAAGACTTCTTTGATCAAAGCTTAGATGAAATCAAGCTTCTGAAACTTGTCAATAAGGGTGACCCAGCAGATGAACATCACATTTTGCGCCTTTATGACTATTTCTACCATCAGGAGCACTTGTTCATTGTAACTGAACTTCTGCGAGCAAACTTGTATGAATTTCAGAAATTCAACCAAGAATCTGGAGGGGAAGCATATTTTACATTAAAGAGATTGCAGATCATTACTCGTCAGTGTTTGGAAGCATTGCAGTACTTGCATGGCTTGGGAATTGTTCACTGTGACCTGAAGCCAGAAAACATTCTAATCAAAAGTTACAAAAGATGTGAGATAAAGGTTATTGATCTTGGAAGTAGTTGCTTCCAAACAGACAATCTGTGCCTATATGTACAGTCCAGATCCTATAGAGCTCCTGAAGTGATGTTAGGTCTTCAATATGATGAAAAGATTGATATATGGTCTCTGGGATGCATTCTGGCTGAGCTATGCTCTGGTGAAGTGCTGTTCCCAAATGATGCAGTTGTGATGATCCTGGCACGCATAATTGGAATGTTTGGTTCTATTGATATGGAAATGTTGGTGAAAGGACAAGAAACGCACAAGTACTTCACCAAAGAATATGATATTTATTATGTAAATGAGGAGACTGATGAACTGGAGTTCTTGATTCCAGAAGAGTCATCGTTGGAGCAGCACCTACAGGTTACTGATACTATGTTTATCAACTTTATCAGATACCTACTCTGCATCAACCCCAAAAGAAGGCCTACTGCAAGACAAGCACTAAAGCATCCATGGCTTTCCTATGTTTACTAA	2160	0.4218	MAVSNGVEAVLEFLRKNGLSEAESALREDIIENTDLGNFDYEKFFFPMVPPPPPVKVRSFSRPSELAAMDDDCSKSSSDEFITIGSSTSRVSSLEFVNPYGIRSSSQTQNDSESSSERLSQFGTARDYHDFDMQNEPYWYNEKDDDYFMTPSFEGPDYFACQSEDKFVMTAETEIQRDNSLHLGYNFEEFQLQGNSNGGYMDKACLDNHSSVGDGTVTCSKGYCHVDNNDQFEEELEGKAEKPSVACSCEVPFCKSSPGSGGSCSLDPTNFGYPNLKEIHLNNFHLKVVGDFNSLDSTSELTLNQSFDHYTKNDSSKKYEGPYDLTIEVTDKNLPNGLDTSKAQVGGELAEDCQDPELDADGEDTTDDELLKYTQEEEYEVFDLRIIHRKNRTGFEENKELPIVLNTVLAGRYYVTEYLGSAAFSRVVQAHDLQTGIDVCLKIIKNDKDFFDQSLDEIKLLKLVNKGDPADEHHILRLYDYFYHQEHLFIVTELLRANLYEFQKFNQESGGEAYFTLKRLQIITRQCLEALQYLHGLGIVHCDLKPENILIKSYKRCEIKVIDLGSSCFQTDNLCLYVQSRSYRAPEVMLGLQYDEKIDIWSLGCILAELCSGEVLFPNDAVVMILARIIGMFGSIDMEMLVKGQETHKYFTKEYDIYYVNEETDELEFLIPEESSLEQHLQVTDTMFINFIRYLLCINPKRRPTARQALKHPWLSYVY	719

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco3g00742	719	Gene3D	Transferase(Phosphotransferase) domain 1	467	715	-	-
	Phco3g00742	719	FunFam	Serine/threonine-protein kinase ppk15	492	716	-	-
	Phco3g00742	719	CDD	PKc_DYRK_like	413	715	-	-
	Phco3g00742	719	Gene3D	Phosphorylase Kinase; domain 1	408	494	-	-
	Phco3g00742	719	SUPERFAMILY	Protein kinase-like (PK-like)	402	716	IPR011009	-
	Phco3g00742	719	ProSiteProfiles	Protein kinase domain profile.	413	715	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco3g00742	719	FunFam	Putative serine/threonine-protein kinase dyrk2	407	494	-	-
	Phco3g00742	719	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	539	551	IPR008271	GO:0004672\|GO:0006468
	Phco3g00742	719	MobiDBLite	consensus disorder prediction	102	121	-	-
	Phco3g00742	719	Pfam	Protein kinase domain	415	715	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco3g00742	719	SMART	serkin_6	413	715	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco3g00742	719	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	107	715	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco3g00742	Phco-Chr3	6089409	6094181	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-PRP4	Phco3g00742		Pkinase	5.6e-51	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco3g00742	3	6089409	6094181	Phco3g00742	3	6089409	6094181	ECH