Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00740 ATGAAGAATAATAATTCACTCTACTCTGCCGTTACCTTCACCCTCTTCACTGTGATCCTCTTAATCCTCTCTTCACTGTCACCCTCCCATGCCCTCGGTTCCGCCTCCACCCTCGCCGTCACCTCCGCCGCCGTCTGCGGCGTGGTGGCATCGGAGCCGACGCGGCGCATTGCGTGTTACAGCAATGACCACGTCGTCGCCGTCGCCCCCAACATCTCGTTCTCCGCGATCTCCGGCGGCCTGAGCTACTTCTGCGGCCTCCGGTCCGGCAACTACACTCTCCTCTGCTGGGACACCCTTTCCTACTTCCAAAGCAAGAGACTTTACAACAATGACACTGTTCTATTCGAGAATCTCGCCCTCGGGGACTTCCAGGTTTGCGCCACTGCGGTCGGCGACGGAACGGCGTCGTGTTGGAGAACCGATGTCGACTTCGAATTGCCTTCTGGGTCGGACCGGTTTTCTTCTATTTCATCTGGGTCGGGTTTTTCTTGCGGAATTTTGAAGGGTAGTAATTGGGTTCGGTGTTGGGGGGTTGAGGCTATGGCGAGAAAAATGGAGAGTGAGTTTGGGAACGTGTCTATGGCGAGTCTTGTGGCTGGGGAGTCACATGTTTGTGGGTTGAATTCAAGTGGGTATTTGGTTTGTAGAGGAAGTAACGATTTTGGTCAGATTGATGTTCCTGAAGGAGGGGCTTTGGAGTTTTCTGGTATGGCACTTGGCGCTGAGCATAGTTGTGCTATTCGGAGATCCAATGGTTCTGTCGTCTGTTGGGGTGGGAGGGGGTTGTTTGAGGTGAATGTTACAAAAGGTGTTTCTTTTGAGGTTCTTGTTTCTGGGTCCAATTTTACTTGTGGATTGACGACTAACAATTTTTCAGTTATTTGTTGGGGTCCTGGTTGGGCTAATGGTTCAGGTTATGAAATTCCTTTGCCTCCAATACTTCCAGGGCCTTGTGTTCAATCTTCCTGCAGTGAATGTGGGATATATCCTCAATCCGAGTCTCTGTGTTCTGGCTATGGTAACATCTGTAAGCCAATACCTTGTTGGCCTCCAATGCCAGGGCTAGAGCCACCACAGATGGCACCGCCGCCTGTGGTGGCGGTGCCACCTGCTTCTCAGCCAAGAGCCTTCACCAAAGGGTTATTGGCATTTGCCATTGTTGGTTCCGTGGGAGGTGTTGCTGGGATATGCAGTGTAATTTACTGCTTATGGACTGGGGTTTGTTTAGGGAAGAAGAAAATTCACAATTCTGTGCAGCCAACAATCACTAGAGGTGGCAGTGTAAATGGTGGGGGTGGTTCTAACAACAGTATTAGTCCTCCTTCGAGATCATCCACCATTAGGCGTCAAGGGTCGCGGATAATGAGACGCCAAAGGAGTGGAACCTCATCAACAAAGCATCCTGAAAGGGCTGAGGAATTCACCTTGGCCGAGCTTGTTGCAGCTACGGATAATTTCTCCCTTGAGAACAAGATTGGTGCTGGAAGCTATGGCGTTGTTTATAGAGGCAAACTTGCGGATGGCCGTGAGGTGGCAATCAAAAGGGGCGAAACGGGTACCAAGATGAAGAAGTTTCAAGAGAAAGAGAGTGCATTTGAATCAGAATTGGCCTTCTTGTCCCGTTTACACCACAAGCACTTGGTAAGGCTGGTGGGGTTCTGTGAAGAGAAAGATGAGAGGCTTTTGGTGTATGAGTACATGAAGAATGGAGCATTGTATGATCATTTGCATGACAAAAATAACGTGGACAAGAGTAGCAGTGTCTTGAATTCTTGGCGAATGAGGATCAAAATCGCTCTGGATGCTTCGCGCGGAATTGAGTATCTCCATAACTATGCAGTTCCGTCTATAATTCACCGAGATATAAAGTCTTCCAACATTCTCATTGACGCGACTTGGACAGCGAGAGTATCCGATTTTGGACTGTCATTGATGAGTCCAGAATCTGACCTTGATTACCGGCCAACGAAGGCAGCAGGAACTGTTGGATATATTGATCCGGAATATTATGGTCTAAATGTATTGACAGCAAAGAGTGATGTCTATGGGCTTGGAGTGGTACTGCTAGAGCTATTAACAGGAAAGAGAGCAATATTCAAGAATGATGAAAATGGAGGCACCCCAGTGAGTTTGGTGGACTTTGCAGTGCCAGTTATTATGGCAGAAGAATTGGCAAAAATTTTGGACCCAAGGGTTGAACCACCAGAGTTAAATGAGACAGAAGCAGTGGAGCTAGTGGCATATACAGCTATGCATTGTGTAAATTTGGAGGGGAAGGACAGACCAACAATGGCTGATATTGTGGCAAATTTGGAGCGTGCTTTGGCTCTTTGTGATACTAGTCATGGCAGCATTTCCAGTGGTACAGTCTCCATTGTATCAGACTGA 2391 0.4831 MKNNNSLYSAVTFTLFTVILLILSSLSPSHALGSASTLAVTSAAVCGVVASEPTRRIACYSNDHVVAVAPNISFSAISGGLSYFCGLRSGNYTLLCWDTLSYFQSKRLYNNDTVLFENLALGDFQVCATAVGDGTASCWRTDVDFELPSGSDRFSSISSGSGFSCGILKGSNWVRCWGVEAMARKMESEFGNVSMASLVAGESHVCGLNSSGYLVCRGSNDFGQIDVPEGGALEFSGMALGAEHSCAIRRSNGSVVCWGGRGLFEVNVTKGVSFEVLVSGSNFTCGLTTNNFSVICWGPGWANGSGYEIPLPPILPGPCVQSSCSECGIYPQSESLCSGYGNICKPIPCWPPMPGLEPPQMAPPPVVAVPPASQPRAFTKGLLAFAIVGSVGGVAGICSVIYCLWTGVCLGKKKIHNSVQPTITRGGSVNGGGGSNNSISPPSRSSTIRRQGSRIMRRQRSGTSSTKHPERAEEFTLAELVAATDNFSLENKIGAGSYGVVYRGKLADGREVAIKRGETGTKMKKFQEKESAFESELAFLSRLHHKHLVRLVGFCEEKDERLLVYEYMKNGALYDHLHDKNNVDKSSSVLNSWRMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILIDATWTARVSDFGLSLMSPESDLDYRPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKNDENGGTPVSLVDFAVPVIMAEELAKILDPRVEPPELNETEAVELVAYTAMHCVNLEGKDRPTMADIVANLERALALCDTSHGSISSGTVSIVSD 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00740 796 MobiDBLite consensus disorder prediction 422 450 - -
Phco3g00740 796 ProSitePatterns Protein kinases ATP-binding region signature. 493 515 IPR017441 GO:0005524
Phco3g00740 796 Gene3D Transferase(Phosphotransferase) domain 1 568 785 - -
Phco3g00740 796 Pfam Protein kinase domain 488 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00740 796 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 193 782 IPR044815 GO:0004674
Phco3g00740 796 SMART serkin_6 487 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00740 796 FunFam Serine/threonine-protein kinase-like protein CCR4 568 790 - -
Phco3g00740 796 Pfam Regulator of chromosome condensation (RCC1) repeat 196 224 - -
Phco3g00740 796 MobiDBLite consensus disorder prediction 422 471 - -
Phco3g00740 796 FunFam serine/threonine-protein kinase-like protein CCR1 456 567 - -
Phco3g00740 796 SUPERFAMILY Protein kinase-like (PK-like) 465 772 IPR011009 -
Phco3g00740 796 SUPERFAMILY RCC1/BLIP-II 67 300 IPR009091 -
Phco3g00740 796 Gene3D Phosphorylase Kinase; domain 1 448 567 - -
Phco3g00740 796 Gene3D - 148 343 IPR009091 -
Phco3g00740 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Phco3g00740 796 ProSiteProfiles Protein kinase domain profile. 487 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00740 Phco-Chr3 6059989 6062379 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Phco3g00740 Pkinase 3.2e-45 CL0016