Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00729 ATGGAACCAGGTGCAAAACTCTCAAAGTTCGATGGAGGAGAACGTGTTGATGCAAGTAGATACCGGAAGTCAAACTTCTTTCGGGGAACCATACCTTCGTTCTTGGGCTCTTTAGGATCCCTGGAAATCCTAGACCTTTCTAACAACAGCTTCTCAGGCACAATCCCTGGTGGACTACAAAAGTTGAGTTATTTGAATACTCTGAACTTGTCTTTTAACCATCTCTATAGTGAGGTTCCTACAGGAGGTGTCTTTAATAATGTTACAGCAATTTCACTCATTGGAAATAAGGATCTCTGTGGGGGGATACCTCAACTGAATCTCCCTGCATGCTCTAGGGTTCCCTCAAAGAAACACAAGTGGTCTTTTCGACAGAAACTCATCCTAATCATTGTAATTGGAATTGGAGGGGGTTTGATCAGTTCCATAATATCTATCAGCATCTACTATTTCAGGAAAAAGCCCAAATTATTTTGTTCGTCACGGTCTCTGCAAAATTTGTATTTGAAGGTTTCTTATGGAGAGCTGCATGAAGCCACCAATGGATTTTCTTCATCCAATTTAGTAGGTGCTGGAAGCTTTGGATCTGTGTACCGAGGATCTCTTATCCATTTTGAAAAACCTGTTGCTGTAAAGGTGTTGAATCTTGAAGCTTTGGGGGCGTCAAAGAGTTTCACATCTGAATGCAAGGCTCTAGAAAAGATGAAGCACCAGAATGTACTTAAGATCCTGACTTATTTTTCAGGTATTGATTATAATGGAGATGATTTCAAGGCTATAGTTTTTGAGTTGATGCTTAACGGGAGTCTAGAAAGTTTGCTGCACAGCGACGAAGAGCTCAAGTCTAGAAATCTCAATCCCAACCTTCAACTTTGGCTAAATATTGCTCTTGATGTTGCTAATGCATTGGATTATCTTCACCATGGTTCCGAGAAAACTGTAGTTCACTGTGATATTAAACCAAGCAACGTTCTTCTTGATGATGAGGTTGTTGCCCACTTAGGAGATTTTGGGTTAGCAAGGCTCCTTACTGTGGTCACGGGACATGCAAGTAGAGATCAGGTGAGTTCGTTAGCAATCAAAGGAACCATTGGATATATTCCCCCAGAGTACGGGGCAGGTGGTCGAGTATCAGCACAAGGAGATATTTACAGCTACGGAATTCTTGTGTTGGAGATGCTGACGGGAAAGAAACCAACGGATGACATGTTTGGTGAGAGTCTAAGCCTACACAAATTCTGTCAGATGGCAATTCCTGAAGGAATCCTTGAGATAGTAGATTCACGTTTGCTTGTGCCATATGGGGTCATGGAAACCAACATCAGAGAGTGGTTGGCTTCCTTTGCTAGGATTGGAGTTGCATGTTCTGCAGAATTGCCCGTTCAGCGGTTGGCCATAAAAGATGTGATAATGGAGTTGAATGCAATCAAACACAAGTTGTCTTACTAG 1449 0.4203 MEPGAKLSKFDGGERVDASRYRKSNFFRGTIPSFLGSLGSLEILDLSNNSFSGTIPGGLQKLSYLNTLNLSFNHLYSEVPTGGVFNNVTAISLIGNKDLCGGIPQLNLPACSRVPSKKHKWSFRQKLILIIVIGIGGGLISSIISISIYYFRKKPKLFCSSRSLQNLYLKVSYGELHEATNGFSSSNLVGAGSFGSVYRGSLIHFEKPVAVKVLNLEALGASKSFTSECKALEKMKHQNVLKILTYFSGIDYNGDDFKAIVFELMLNGSLESLLHSDEELKSRNLNPNLQLWLNIALDVANALDYLHHGSEKTVVHCDIKPSNVLLDDEVVAHLGDFGLARLLTVVTGHASRDQVSSLAIKGTIGYIPPEYGAGGRVSAQGDIYSYGILVLEMLTGKKPTDDMFGESLSLHKFCQMAIPEGILEIVDSRLLVPYGVMETNIREWLASFARIGVACSAELPVQRLAIKDVIMELNAIKHKLSY 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00729 482 PRINTS Leucine-rich repeat signature 41 54 - -
Phco3g00729 482 PRINTS Leucine-rich repeat signature 62 75 - -
Phco3g00729 482 ProSiteProfiles Protein kinase domain profile. 183 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00729 482 Gene3D Phosphorylase Kinase; domain 1 147 263 - -
Phco3g00729 482 SUPERFAMILY Protein kinase-like (PK-like) 165 473 IPR011009 -
Phco3g00729 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Phco3g00729 482 Gene3D Transferase(Phosphotransferase) domain 1 265 481 - -
Phco3g00729 482 PANTHER OS04G0122200 PROTEIN 23 477 - -
Phco3g00729 482 Gene3D Ribonuclease Inhibitor 19 120 IPR032675 -
Phco3g00729 482 Pfam Protein kinase domain 185 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00729 482 SUPERFAMILY L domain-like 24 100 - -
Phco3g00729 482 ProSitePatterns Protein kinases ATP-binding region signature. 189 212 IPR017441 GO:0005524
Phco3g00729 482 SMART serkin_6 183 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00729 482 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 265 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00729 Phco-Chr3 5985392 5988263 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Phco3g00729 Pkinase 5.3e-39 CL0016