Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00717 ATGGTTCAGATAATCTCAGAACTAATAAAGTTGAGTTCAGAGGCAGAGAGAGAGAGGGAGAGAGAGAGAGAATCATATCTGGAAGAAAACATGGACGAGGGCATGTCAGGCTTTTGCATCAGATCAGGAAGTGTCCGTGGTAAAAGTGGAAGTACTACTTCTTCTGCCACTGGCACCAAGTGTGGGCGTTGGAATCCCACCACTGAACAGGTTAAACTTCTAACTGAACTCTTCAGGTCAGGGCTCCGCACTCCAAGCACTGACCAGATTCAAAAGATCTCCACTCAGCTCAGCTTTTATGGTAAGATAGAGAGCAAGAATGTCTTCTATTGGTTTCAGAACCATAAGGCCAGGGAAAGACAGAAGCGCCGCAAGGTCTCCTTTGATGACAAGGATCTCATTCGTAGACAAAACTCCTTCAATACTTCCACACAAAGTATTGCTGATACGTATCGAGTTTCAGAGCCAGATAGGGTGATTGAGACTCTTCAACTCTTTCCCTTGAACTCCTTCGGTGAATCTGAACCAGGGAACCTAAGGTTACATGCAAATGAATGTAGGGATAGCAGTACAGTGTTTTCATACATGATGGATGAACAAATAGAGCACCCACCATTGGACCTGCGCTTGAGCTTTCTGTAA 642 0.4486 MVQIISELIKLSSEAERERERERESYLEENMDEGMSGFCIRSGSVRGKSGSTTSSATGTKCGRWNPTTEQVKLLTELFRSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDDKDLIRRQNSFNTSTQSIADTYRVSEPDRVIETLQLFPLNSFGESEPGNLRLHANECRDSSTVFSYMMDEQIEHPPLDLRLSFL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00717 213 Pfam Homeodomain 61 121 IPR001356 GO:0003677
Phco3g00717 213 FunFam WUSCHEL-related homeobox 11 60 128 - -
Phco3g00717 213 SUPERFAMILY Homeodomain-like 62 124 IPR009057 -
Phco3g00717 213 Coils Coil 5 25 - -
Phco3g00717 213 CDD homeodomain 63 123 IPR001356 GO:0003677
Phco3g00717 213 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 48 139 IPR044555 GO:0003700|GO:0099402
Phco3g00717 213 ProSiteProfiles 'Homeobox' domain profile. 57 122 IPR001356 GO:0003677
Phco3g00717 213 Gene3D - 60 128 - -
Phco3g00717 213 SMART HOX_1 59 126 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00717 Phco-Chr3 5883607 5884462 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Phco3g00717 Homeodomain 8.3e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02753 2 56994060 56999738 Phco3g00717 3 5883607 5884462 ECH
Phco3g00717 3 5883607 5884462 Phco3g00717 3 5883607 5884462 ECH
Phco2g02753 2 56994060 56999738 Phco3g00717 3 5883607 5884462 PCT