LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco3g00708	ATGATTTTTCCAAGATTTTGTACGAATCTAAAAGGTATGGAATTGGAAACCCTCTACCCTCCTTGTTTTATGCCAGATTCAAATTGGTTTGTGCAAGAAAGCCACAGCACAGAATGGACTAGAGAGGATAACAAGAAGTTTGAAAGTGCCCTTGCTATATATGACAAGGACACCCCAGATAGATGGTTCAAGGTGGCGGCCATGATCCCTGGGAAGACTGTGTTCGATGTGATCAAGCAGTATAGGGAATTGGAAGAAGATGTGAGTGAAATTGAAGCAGGGCGTGTTCCAATTCCTGGTTATCTTGCCTCTTCTTTCACCTTTGAGCTTGTTGACAACCACAACTATGATGGATGCAGAAGAAGGCCTGCACCTATCAGAGGTTCCGATCAAGAGAGAAAGAAAGGGGTTCCCTGGACTGAAGAGGAACACAGACGTTTTCTGATGGGACTTCTAAAGTATGGCAAAGGAGACTGGAGAAATATCTCTCGCAATTTTGTGGTCACAAAGACTCCCACCCAAGTTGCTAGCCATGCACAGAAGTACTACATAAGGCAAAAGGTTTCTGGAGGGAAAGATAAAAGGAGACCTAGCATCCATGATATAACCACTGTTAACCTTACAGAAACTGCTGCATCAGATAAGATCAAGTCTCCGTTATTTAACTTGTCGCCCATGATTACACCACAGCAGAAGCTGAATAGTATGTCAAAAGTACAGTTGGACTGGACTAGCCACAGCAATGATGGATCACTCATGGTTTTCAACCCAAATACTGATAACTTGTTTGTGTCCTCTTCATCTGATATCACTTCCATGGCCCTGAAAATGCAAGGGCAGGATCTCTATGACTGTGCTTTACATGAGGCTTATGCCAAGGTAAAAGTTCCAGGTTTCGGCATGGCTCCTAGAGACTTCAATAATGAAGCTGTTTTCGGTATTCATGCACTGTAG	954	0.4329	MIFPRFCTNLKGMELETLYPPCFMPDSNWFVQESHSTEWTREDNKKFESALAIYDKDTPDRWFKVAAMIPGKTVFDVIKQYRELEEDVSEIEAGRVPIPGYLASSFTFELVDNHNYDGCRRRPAPIRGSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDITTVNLTETAASDKIKSPLFNLSPMITPQQKLNSMSKVQLDWTSHSNDGSLMVFNPNTDNLFVSSSSDITSMALKMQGQDLYDCALHEAYAKVKVPGFGMAPRDFNNEAVFGIHAL	317

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco3g00708	317	CDD	SANT	38	84	IPR001005	-
	Phco3g00708	317	ProSiteProfiles	Myb-like domain profile.	131	183	IPR001005	-
	Phco3g00708	317	ProSiteProfiles	SANT domain profile.	139	187	IPR017884	-
	Phco3g00708	317	SUPERFAMILY	Homeodomain-like	37	91	IPR009057	-
	Phco3g00708	317	SUPERFAMILY	Homeodomain-like	133	187	IPR009057	-
	Phco3g00708	317	Pfam	Myb-like DNA-binding domain	138	182	IPR001005	-
	Phco3g00708	317	Gene3D	-	137	188	-	-
	Phco3g00708	317	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	32	265	IPR043363	-
	Phco3g00708	317	Gene3D	-	31	98	-	-
	Phco3g00708	317	ProSiteProfiles	SANT domain profile.	34	89	IPR017884	-
	Phco3g00708	317	FunFam	transcription factor MYB1R1	137	188	-	-
	Phco3g00708	317	CDD	SANT	138	182	IPR001005	-
	Phco3g00708	317	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	134	186	IPR006447	GO:0003677
	Phco3g00708	317	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	131	187	IPR017930	-
	Phco3g00708	317	FunFam	Transcription factor SRM1	31	98	-	-
	Phco3g00708	317	SMART	sant	35	87	IPR001005	-
	Phco3g00708	317	SMART	sant	135	185	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco3g00708	Phco-Chr3	5767315	5768978	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Phco3g00708		Myb_DNA-binding	1.4e-10	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco2g02744	2	56925166	56926655	Phco3g00708	3	5767315	5768978	ECH
	Phco3g00708	3	5767315	5768978	Phco3g00708	3	5767315	5768978	ECH
	Phco2g02744	2	56925166	56926655	Phco3g00708	3	5767315	5768978	PCT