Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00667 ATGCTCCTTCTTCTCCATCTCTCTGTCATTTTCATTCCTCTTCCTCCCTTTTCCCTTCCCTCATCTTCTCTCTCACAACATTGCTTTTTCCTCCTTATGGCTCCCTCTTCAGATGTCAACCATCATTCTCATCCATGCATATACGGGGATTATATTTCTCCTCGCTCGGAGAGAAAGTCTGGTTTCATGAAATGGCTCAGTAAACTTTTCAGAGGTGGGTCCAATAGAGGGAGGGGTGGTCGTCATCTGCATGAGCCAGCAGAGGAAAGCACGGTTTGGGGAGCTCCATCAAGAGCGTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAGGATCTAGGGCATGCAATGGCACTTTCTTCAGCCGAAGATTTGAAGAGACCAAACGGATATAGTTGGGGACAAGACACTGGAGACGATTACTCAAAGGCACCTTTGGATACCCTTAGCTCATCTGCACACCCTCCATTTGCCCCTACACCATTTTATCCCCACGAATATAGTTTGTCATTGAACAGAAGAATATGTGGTGGCTGCAACCAAGAAATAATGTATGGAAATTGTTTGGGGTGCATGGATACGTATTTTCACCCAAATTGCTTTCGCTGTCATTCCTGTGGGTACCCCATTACTGAGCGTGAGTTTTCCTTGTCAGGGAAGCATCCGTATCATAAATCCTGCTTTAAAGAATTGACTCATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCAGCAGGCTTGATTGAGTACAGATGCCACCCCTTTTGGTCCCAAAAATATTGTCCATCTCATGAATATGATAATACAGCTCGCTGCTGTAGTTGTGAAAGATTGGAGCCTCTGAACATAAAATACTATAGACTAGAAGATGGACGTAGTTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGACACTGGTGACTGCCAGCCTCTTTACCATTCTATCAGAGATTATTATGAAGGAATGCAGATGAGAATAGATCAACAAATTCCCATGCTTCTAGTTGAGAGAGAAGCACTTAATGAAGCTATTGTAGGGGAGAAAAATGGTTTTCTACACTTACCAGAAACGAGGGGTTTATGCCTTTCAGAGGAGCAGACTGTGACCATTATACATAGAAGGCCTAGAATTGGAGGCCATCGACTGATAGGGATGAGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTTACAGCAATTCTTGTCCTATATGGTCTTCCTAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGGCTGGCTACGCCTTAAAGGTTACCGCAACCTTAACCCTGAAGTGGAGGAAGGCATTTGTCAAGTTCTTTCCTATATGTGGCTTGAGTCAGAAGTAATGCCTAGCTTTCAAAGCATGCCATCAACATCCACAGCTTCTGCTTCTTCTTCCTCCTCCTCAAAGAAGGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGAATTTTTCAAGAATCAGATTGCCAATGATTCTTCCCCAGCTTACGGTGGTGGCTTCAGAGCTGCTAATGAAGCTGTTAATAAATATGGTTTGCGTAGAACACTTGACCATATTCATTTGACTGGATTTTTTCCAGTGTAA 1617 0.4298 MLLLLHLSVIFIPLPPFSLPSSSLSQHCFFLLMAPSSDVNHHSHPCIYGDYISPRSERKSGFMKWLSKLFRGGSNRGRGGRHLHEPAEESTVWGAPSRALDDRARAQKEKEDLGHAMALSSAEDLKRPNGYSWGQDTGDDYSKAPLDTLSSSAHPPFAPTPFYPHEYSLSLNRRICGGCNQEIMYGNCLGCMDTYFHPNCFRCHSCGYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPLNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFLHLPETRGLCLSEEQTVTIIHRRPRIGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSFQSMPSTSTASASSSSSSKKGAKSHVENKLGEFFKNQIANDSSPAYGGGFRAANEAVNKYGLRRTLDHIHLTGFFPV 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00667 538 CDD LIM_DA1 176 228 - -
Phco3g00667 538 MobiDBLite consensus disorder prediction 101 117 - -
Phco3g00667 538 SMART lim_4 175 227 IPR001781 -
Phco3g00667 538 Gene3D Cysteine Rich Protein 171 235 - -
Phco3g00667 538 FunFam Protein DA1-related 2 163 229 - -
Phco3g00667 538 ProSiteProfiles LIM domain profile. 174 234 IPR001781 -
Phco3g00667 538 MobiDBLite consensus disorder prediction 76 119 - -
Phco3g00667 538 Pfam LIM domain 176 229 IPR001781 -
Phco3g00667 538 Pfam Protein DA1 325 532 IPR022087 -
Phco3g00667 538 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 170 201 - -
Phco3g00667 538 ProSitePatterns LIM zinc-binding domain signature. 176 210 IPR001781 -
Phco3g00667 538 PANTHER PROTEIN DA1-RELATED 2 65 537 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00667 Phco-Chr3 5365802 5370233 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco3g00667 DA1-like 3.6e-98 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00667 3 5365802 5370233 Phco3g00667 3 5365802 5370233 ECH
Phco2g02714 2 56674272 56679991 Phco3g00667 3 5365802 5370233 PCT