Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00643 ATGACAGGGCTTGGCTCATCATGTGGAGCATGCAAGTTCCTAAGGAGAAAATGCACGAGTGATTGTGTATTTGCTCCTTACTTCTCCTACGACCAAGCTTCAACCCATTTTGCAGCAGTGCATAAGATTTATGGAGCTAGTAACGTCTCCAAGCTATTGTCACATCTTCCAATCCAGAATAGAAGCGATGCTGCCACCACCATATCTTATGAAGCCTTGGCTCGCGTGCATGATCCTATTTATGGCTGTGTTGCTCATATCTATGCATTGCAGCAACAGGTTGTGAACTTGCAAGAGGAGATAGATGCTCTTGGAAGCATAGTGGCAAATTCCACAGTTAGTGTTGTGAATTCTGGCACTGTCGAAGCACCAATGTACTCAGACAACGGAATACCTTACAATATTTTGCAGCATGATGCTACAAGGACACAGTATTTTCAAAATAATCTGGCTAACTTTCTTTCACAAGATGGAAGTGCCACAGTCTACCAAAGTTTCGACTCACAGATGAATATAGAGCTTCCTAATGCACACGTGGAAGAACCTTCCTTTGGTGGTTCCAACTCCAATCCGTTAGAACAGTTCCTATCTGGAATTGACCAAGAGGTCTTCGTGAATCATCCATGGTTCAAGCATAATGCAGACATAAAGGGCTCGGAATATTGA 666 0.4324 MTGLGSSCGACKFLRRKCTSDCVFAPYFSYDQASTHFAAVHKIYGASNVSKLLSHLPIQNRSDAATTISYEALARVHDPIYGCVAHIYALQQQVVNLQEEIDALGSIVANSTVSVVNSGTVEAPMYSDNGIPYNILQHDATRTQYFQNNLANFLSQDGSATVYQSFDSQMNIELPNAHVEEPSFGGSNSNPLEQFLSGIDQEVFVNHPWFKHNADIKGSEY 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00643 221 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Phco3g00643 221 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Phco3g00643 221 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00643 Phco-Chr3 5196755 5197886 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phco3g00643 LOB 6.8e-36 No_clan