Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00615 ATGGGGTGCTGCTTCAGTGCCAAGATCAAAGCAGAGAGCCCTCCACGCAACGGTTTGAGCTCAAAGGATGGTAACACAGAAGAGGATGGCTTAAGTGGCAAGATCTCCACTCCCTCCGTGCCTCCAACTCCACGGACAGAGGGTGAGATCTTGAAGTCTTCAAATATGAAGAGCTTCACCTTTGGTGAGCTAAAAACTGCTACAAGAAACTTTCGTCCGGATAGTGTGGTGGGTGAAGGTGGGTTTGGTTGTGTTTTTAAGGGGTGGATTGATGAGCAGTCACTTGCACCAGTTAGACCAGGGACTGGATTGGTCATTGCTGTGAAGAGGCTAAACCAAGAAGGTCTGCAGGGACACAGTGAATGGTTGACAGAAATCAACTACCTGGGGCAGCTGCATCATCCTAATCTTGTGAAACTGATTGGTTACTGCTTAGAGGATGACCAAAGGCTTTTGGTGTATGAGTTTTTGACAAAGGGAAGTTTGGATAACCATTTATTTAGGAGAGCTTCTTATTTTCAACCACTTTCTTGGAACATCCGAATGAAGGTTGCTCTTGATGCTGCTAAGGGTCTTGCATATCTTCATAGCGATGAAGCAAAAGTGATATATCGAGACTTCAAAGCTTCAAATATCTTACTTGATTCAAATTACAACGCAAAACTTTCTGATTTTGGCTTGGCAAAGGATGGACCAGCAGGTGATAAAAGCCATGTCTCTACAAGGGTAATGGGCACATACGGCTATGCTGCTCCTGAATATATTGCCACAGGTCACTTGACAAAGAAGAGTGATGTATACAGTTTTGGGGTTGTTCTGCTTGAAATTATGTCTGGCAAACGTGCCCTTGACAGCAACAGGCCAAGTGGGGAGCACAATCTAATTGAATGGGCCAAACCATATCTCAGCAACAAACGTAGGATCTTCCAAGTCATGGATGCTCGCATTGAAGGCCAATACTCGATGCGCACAGCTATGAAAGTAGCCAACCTTGCCATTCAATGCCTCTCTGTGGAGCCAAGATTTAGACCAAAAATGGATGAAGTGGTGAGAACATTGGAGGAACTTCAGGATTCTGGTGACAAAGCTGTTGCAGGGGTGGAAAGCTATCATTATCAAACTGTGAGAAGGAGTGCTCATAGCTCAAGCAGCAGTGGCTACAGACAACATAGAGGTAAACAACATGAAACAACAAAGAAGTGA 1203 0.448 MGCCFSAKIKAESPPRNGLSSKDGNTEEDGLSGKISTPSVPPTPRTEGEILKSSNMKSFTFGELKTATRNFRPDSVVGEGGFGCVFKGWIDEQSLAPVRPGTGLVIAVKRLNQEGLQGHSEWLTEINYLGQLHHPNLVKLIGYCLEDDQRLLVYEFLTKGSLDNHLFRRASYFQPLSWNIRMKVALDAAKGLAYLHSDEAKVIYRDFKASNILLDSNYNAKLSDFGLAKDGPAGDKSHVSTRVMGTYGYAAPEYIATGHLTKKSDVYSFGVVLLEIMSGKRALDSNRPSGEHNLIEWAKPYLSNKRRIFQVMDARIEGQYSMRTAMKVANLAIQCLSVEPRFRPKMDEVVRTLEELQDSGDKAVAGVESYHYQTVRRSAHSSSSSGYRQHRGKQHETTKK 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00615 400 SUPERFAMILY Protein kinase-like (PK-like) 48 354 IPR011009 -
Phco3g00615 400 MobiDBLite consensus disorder prediction 18 52 - -
Phco3g00615 400 Gene3D Phosphorylase Kinase; domain 1 46 156 - -
Phco3g00615 400 MobiDBLite consensus disorder prediction 374 400 - -
Phco3g00615 400 PANTHER OS01G0588500 PROTEIN-RELATED 38 357 - -
Phco3g00615 400 Gene3D Transferase(Phosphotransferase) domain 1 157 376 - -
Phco3g00615 400 Pfam Protein tyrosine and serine/threonine kinase 75 353 IPR001245 GO:0004672|GO:0006468
Phco3g00615 400 FunFam Serine/threonine-protein kinase BIK1 38 156 - -
Phco3g00615 400 MobiDBLite consensus disorder prediction 374 388 - -
Phco3g00615 400 CDD STKc_IRAK 77 356 - -
Phco3g00615 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Phco3g00615 400 ProSiteProfiles Protein kinase domain profile. 71 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00615 400 MobiDBLite consensus disorder prediction 1 52 - -
Phco3g00615 400 FunFam Probable serine/threonine-protein kinase PBL8 157 373 - -
Phco3g00615 400 ProSitePatterns Protein kinases ATP-binding region signature. 77 109 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00615 Phco-Chr3 4935038 4938721 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Phco3g00615 PK_Tyr_Ser-Thr 6.8e-48 CL0016