Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00610 ATGAGAAAACCTTGTTGTGACAAAGAAAACATCAATAAAGGAGCATGGTCTAAGCAAGAAGACCAAAAGCTCATTGACTACATCAGAGTTCATGGTGAAGGTTGTTGGCGTTCCATTCCCAAAGCTGCTGGGTTGCATCGTTGTGGCAAAAGCTGCAGGCTGAGATGGTTAAACTACTTACGACCAGATATCAAACGTGGAATCTTTGCTGAAGATGAAGAAGACCTTATCATCAAACTCCATGCCCTCCTTGGTAACAGGTGGTCACTCATTGCTGGAAGATTGCCCGGAAGGACAGACAATGAGGTGAAGAACTATTGGAATTCTCACATCCGTAGAAAACTAATAAAGATGGGAATTGATCCAAATAACCATAAGCCACACCAAAGCTTTTCTCTTCCTCATTCTTCTTCTGCAGAGGGTGCATCAAATACCGAGTCCATGAACAAAGACCACAGAGTCCCTATCTTCAAATCCCCAGTTGCTGCCACTCATCGTAGGATTTCCTTCAGAGAAGAAGAATCAGCAATTATTTCGTCACCTACTTTGAATCTTGACCTAACAATTGCTTTACCTTCGTCTATGATTGGTGCTTTGGAAGAGAAGGCAATACAAAATTCCGAGTCCACCAAGACACTGGACATGGAAATAGATCTCAACTGTTAG 666 0.4249 MRKPCCDKENINKGAWSKQEDQKLIDYIRVHGEGCWRSIPKAAGLHRCGKSCRLRWLNYLRPDIKRGIFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKPHQSFSLPHSSSAEGASNTESMNKDHRVPIFKSPVAATHRRISFREEESAIISSPTLNLDLTIALPSSMIGALEEKAIQNSESTKTLDMEIDLNC 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00610 221 Gene3D - 13 65 - -
Phco3g00610 221 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Phco3g00610 221 CDD SANT 71 111 IPR001005 -
Phco3g00610 221 Gene3D - 68 146 - -
Phco3g00610 221 FunFam Transcription repressor MYB4 68 134 - -
Phco3g00610 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Phco3g00610 221 CDD SANT 15 60 IPR001005 -
Phco3g00610 221 SMART sant 65 113 IPR001005 -
Phco3g00610 221 SMART sant 12 62 IPR001005 -
Phco3g00610 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Phco3g00610 221 FunFam MYB-related transcription factor 12 65 - -
Phco3g00610 221 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 158 - -
Phco3g00610 221 MobiDBLite consensus disorder prediction 126 149 - -
Phco3g00610 221 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Phco3g00610 221 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Phco3g00610 221 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Phco3g00610 221 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00610 Phco-Chr3 4901863 4903027 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco3g00610 Myb_DNA-binding 1e-15 CL0123