Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00603 ATGGCACTATCTTTGACATCTCATGGGGTCAATCAGTACCAAAAGTGTGGGGTTGAAGAGGAAGATGGCTCACAAAGTACTAATGGCCTCAGCAATGATTCAGCTTCAGCCATAACTCAATGTCCTCCTCTATGTGGCATTGGCAATGAGTATGTTCAAAAGACCACGCATTGCCATCTTGAAGAAGCAGAATCTCTGATCAATTTCAAAGCCAATGAGTTCAGCAACCTCATGCAAGGCAGTGAGTCTTTTCTTAGCTTTCAGCAGAGTTGGCTGTTTTCCAAAGAGAGTAATTTGCATGAAGGTTGTGACCAATGGAACCATGTTAGTCCCAAAAGTACCACAGACATGCGCCTGGTCCAAAATTTCAGTTGCTCTGAAACTGCTACTCGCTATAGCTCCATGTTCAAAGGTGCAAAAGAGAAGCAGCAACATGGTGAAAGTTCATCTTCAGGGTGGCTATACTCAGAACCAAATGCCCATAGTGATAGCCTGAATGAGTCAGCAGCACAAGAATTAGTCTTGAGAAAGCGATCTTTTATGGGAGAGACCATGCAAGCTGCCAATGCCAATGCCAAGAAGCCTTGCACAACTGCAAGTAAAGCAACAAAACCAAAGTCAAGCCCATCCAAGGATCCTCAAAGTGTTGCTGCCAAGAACAGAAGAGAGAGAATAAGTGAGCGGCTTAAGATACTCCAAGAACTGGTCCCTAACGGCTCCAAGGTTGATTTGGTCACCATGTTGGAGAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTGCAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTCCAAGGTGGAAAAGCTCCTGACATTTCTCAAGTAAGACAAGCCATTGATGCCATTCTTTCATCTCAATGA 888 0.4403 MALSLTSHGVNQYQKCGVEEEDGSQSTNGLSNDSASAITQCPPLCGIGNEYVQKTTHCHLEEAESLINFKANEFSNLMQGSESFLSFQQSWLFSKESNLHEGCDQWNHVSPKSTTDMRLVQNFSCSETATRYSSMFKGAKEKQQHGESSSSGWLYSEPNAHSDSLNESAAQELVLRKRSFMGETMQAANANAKKPCTTASKATKPKSSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVQGGKAPDISQVRQAIDAILSSQ 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00603 295 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 258 IPR011598 GO:0046983
Phco3g00603 295 FunFam Transcription factor bHLH83 207 266 - -
Phco3g00603 295 Gene3D - 204 266 IPR036638 GO:0046983
Phco3g00603 295 MobiDBLite consensus disorder prediction 188 221 - -
Phco3g00603 295 MobiDBLite consensus disorder prediction 188 215 - -
Phco3g00603 295 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 64 266 IPR045843 GO:0003700|GO:0006355
Phco3g00603 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 268 IPR036638 GO:0046983
Phco3g00603 295 Pfam Helix-loop-helix DNA-binding domain 219 259 IPR011598 GO:0046983
Phco3g00603 295 CDD bHLH_AtIND_like 210 272 - -
Phco3g00603 295 SMART finulus 215 264 IPR011598 GO:0046983
Phco3g00603 295 MobiDBLite consensus disorder prediction 137 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00603 Phco-Chr3 4863206 4864542 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco3g00603 HLH 1.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00603 3 4863206 4864542 Phco3g00603 3 4863206 4864542 ECH
Phco2g02652 2 56190416 56191967 Phco3g00603 3 4863206 4864542 PCT