Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00593 ATGGTATGCGACCCCACCCGAAGGCTTCTCCCCAAATTCCACTTCTTAGCCTCCAAAGGCGCTTCTCCCTCCGACGTTGTTTACTTTGTCACTAAGAACCCCCGTTTCCTCTGTCATAGCCTCGACAACCGCATCTCTCCCACCTTCCAACTTCTCCGATCGTTATTTCCCTCCGACCTCAAAGCCCTCGCTGTTCTCATCGCCTGTCCCAATGCCGTCGGCAACTATCGCGTCGCACGCAACGTTGAGAGGTTGCTCGACGCCGGAGTCTCACACTCCGCCATTCGGCACTTGCTCTGCTCTCGGTCTTTGGCTCTCTGCTTCAACCTGAGAACCCTCTTGGAGGAATTGAAGCTGTTGGGGTTTGACCCTTTGAAGGTGACCTTCGCCGTGGCCCTTGTGGCCAAAAAGACTGCGAAACCCCTCTGGGATGCCAAAGTCGACGCCTTGAAGAAATGGGGTTGGTCTGAGGATGAGATTTTGGTTGCGTTTAGGAACCAGCCTAAAATGATGCTCTGTTCCATGGAGAAACTTAATGAAGTGACGGGGTTTTGGGTGGGTCGGCTTGGATGGGATCGTTCCGCGCTTATTGCGTACCCGTCGTTGTTTTTGTACAGTTTGGAGAAAAGGCTTGCTCCGAGGGCTTTGGTTGTGCAGTATCTTCTCTCCAGAGGATTGGTGAAGAAGGGTGCTAGCTTGGTCACACCGTTTTCTAAGTCTGATGAGGTGTTTCTGCAAAAGTATGTGAGATCTTTCAAGGAGGAAACGCCCAGGTTACTAGAGCTATATCAGCAGGGACAGGCAACGTGCTAG 813 0.5228 MVCDPTRRLLPKFHFLASKGASPSDVVYFVTKNPRFLCHSLDNRISPTFQLLRSLFPSDLKALAVLIACPNAVGNYRVARNVERLLDAGVSHSAIRHLLCSRSLALCFNLRTLLEELKLLGFDPLKVTFAVALVAKKTAKPLWDAKVDALKKWGWSEDEILVAFRNQPKMMLCSMEKLNEVTGFWVGRLGWDRSALIAYPSLFLYSLEKRLAPRALVVQYLLSRGLVKKGASLVTPFSKSDEVFLQKYVRSFKEETPRLLELYQQGQATC 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00593 270 Pfam mTERF 2 115 IPR003690 GO:0003690|GO:0006355
Phco3g00593 270 Pfam mTERF 145 245 IPR003690 GO:0003690|GO:0006355
Phco3g00593 270 Gene3D Transcription termination factor 3, mitochondrial 2 258 IPR038538 -
Phco3g00593 270 SMART mt_12 161 192 IPR003690 GO:0003690|GO:0006355
Phco3g00593 270 SMART mt_12 96 123 IPR003690 GO:0003690|GO:0006355
Phco3g00593 270 SMART mt_12 27 57 IPR003690 GO:0003690|GO:0006355
Phco3g00593 270 SMART mt_12 193 227 IPR003690 GO:0003690|GO:0006355
Phco3g00593 270 PANTHER CGI-12 PROTEIN-RELATED 2 253 IPR003690 GO:0003690|GO:0006355
Phco3g00593 270 FunFam Mitochondrial transcription termination factor-like 41 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00593 Phco-Chr3 4813744 4814556 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Phco3g00593 mTERF 1.8e-15 No_clan