Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00573 ATGGGAAGACAGCCATGTTGTGATAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAGCTCATCAGCTTCATCCTCACCAATGGCCAATACTGCTGGAGAGCTGTCCCTAAGCTTGCAGGACTGTTAAGGTGTGGGAAGAGTTGCAGGCTGAGGTGGACAAATTACCTTAGACCAGACTTAAAGAGAGGTCTTCTTTCAGAATACGAAGAGAAAATGGTGATTGATCTTCATGCTCAACTTGGCAATAGATGGTCCAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATTAAAAACCATTGGAACACCCACATAAAGAAAAAACTCAAGAAAATGGGCATTGATCCCATCACACACAAACCACTCCCTAATGCAACTGAACAAACCCAAAATCAACCCAAACAACAACAACTACACCAGCCACTAGAAGAAGAGCAAAACCAACAACCTTTGCAAGTTGACTTTGACCACAAGGTTGACCCTAATAAGGAGCCAGAGATTTCACTGGAGTCATCAACCACCACTGAAGCCAGAGAGGAAGACCAAATCATAGCAACACCCCAATTTGACACAATGGAGCTTAATCAGCTAGTGAATAATGGGTTCTGCACAGATGAAGTTCCAATTATTGAACCTAATGAGATTCTAATGCCTTGTGCTCCTTCCTCTTCATCCACCTCTTCATCTTCTTCTTCAAATTCAACCAACATCCTTCAAGACCTGCAGCTACCTGATTTTGAATGGTGTTGTGATTACAGTGACAGTAGTCTTATTATTAACAATAACAACCATGAAGACAAGAACAGCAACAATAGCGGTATGGCCTTGTGGGATGATGATGACTTCATTAGCAAACTTAATTGGCTGATTAACGAAGATGATGATTGTGATGGAAACCAAGTGTTTGATGGTTCTCTCACTCAGTTCTCAAGAATGGTCACGGATTCAGAATCTTGGGCATTTGGCTTGTTTTGA 996 0.4217 MGRQPCCDKVGLKKGPWTAEEDKKLISFILTNGQYCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPITHKPLPNATEQTQNQPKQQQLHQPLEEEQNQQPLQVDFDHKVDPNKEPEISLESSTTTEAREEDQIIATPQFDTMELNQLVNNGFCTDEVPIIEPNEILMPCAPSSSSTSSSSSSNSTNILQDLQLPDFEWCCDYSDSSLIINNNNHEDKNSNNSGMALWDDDDFISKLNWLINEDDDCDGNQVFDGSLTQFSRMVTDSESWAFGLF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00573 331 Gene3D - 11 67 - -
Phco3g00573 331 FunFam MYB-related transcription factor 70 130 - -
Phco3g00573 331 SMART sant 66 114 IPR001005 -
Phco3g00573 331 SMART sant 13 63 IPR001005 -
Phco3g00573 331 CDD SANT 16 61 IPR001005 -
Phco3g00573 331 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Phco3g00573 331 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco3g00573 331 PANTHER F14D16.11-RELATED 1 281 - -
Phco3g00573 331 MobiDBLite consensus disorder prediction 129 160 - -
Phco3g00573 331 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco3g00573 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco3g00573 331 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Phco3g00573 331 FunFam MYB transcription factor 11 67 - -
Phco3g00573 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco3g00573 331 Gene3D - 70 156 - -
Phco3g00573 331 CDD SANT 74 112 IPR001005 -
Phco3g00573 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco3g00573 331 MobiDBLite consensus disorder prediction 122 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00573 Phco-Chr3 4589784 4591935 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco3g00573 Myb_DNA-binding 1.5e-12 CL0123