Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00569 ATGAAGTCTGCGCGGGTCATAGAAGCGATTTTCTTTACTCTCCTAACGTGCGTCTTCGCCATTGCAGATTCGGATCTAGCTTCGGACAGAGCGGGGTTAGTGTCACTCCGAAGCGCGTTGGGGGGACGCACGCTGCTATGGAACACCACTCAAAGAACTCCCTGCTCCTGGACCGGCGTAACCTGCACCAACGACAGAGTAACCATGCTGCGCCTCCCTGCGATGGGTCTCTCCGGTTCGCTACCCTCCGGTTTGGGAAACCTCACCGAATTGCAGACGCTCTCCCTCCGGTTTAACGCGCTAACCGGACGAATCCCGGCGGATTTCGTTAACCTCAAAGCGCTGCGGAACCTCTACCTCCAGGGAAACTTCTTCTCCGGCGAAGTTCCTGATGCGGTGTTCGCTTTGCAGAACCTTGTGAGGTTGAATTTAGGTAACAACAATTTCAGCGGCGAGATTTCGCCCAAGTTCAATGGTCTCACTCGTTTGTCCACTCTTTATCTCGAACGCAACAATTTCACTGGTTCAATCCCTGACCTTAGTGTTCCGCCTCTGGATCAGTTCAACGTCTCGTATAATTCCCTTAACGGTTCCATTCCGAACCGGTTTTCGCGTTTGGACCAAACCGCTTTCCTCGGAACCTCTCTCTGCGGGAAGCCCTTACAACTTTGCCCCGGAACCGAGGAGAGAAAGAGTAAATTATCCGGTGGTGCCATTGCGGGTATTGTGATTGGTTCCGTGTTTGGTTTGCTGTTGATTCTGCTGCTTTTGTTCTTTTTGTGTAGAAAAAGGAGTGGGAAAAACGATGGAAGTGTGTCAACTGGGAAGCGTGATGTGGAAGGTGAAGTGTCTCGTGAAAAGAGTGTTGAGAGTGGGAATTCAGGTTCCGCAGTGGCAGGTTCGGTGGAGAAGAGTGAGGTTCAAAGCAGTGGTGGTGGAGATAAGAGTTTGGTGTTTTTTGGGAATGTGAATAGAGTGTTTAGTTTGGATGAGTTGTTGAGGGCTTCTGCGGAAGTGTTGGGGAAAGGAACGTTTGGAACGACTTATAAGGCGACTTTGGAAATGGGGGTGAGTGTGGCGGTGAAGAGGTTGAAGGATGTTACTGCCACAGAGAGGGAATTCAGGGAGAAGATTGAGCAAGTGGGGAAGATGGTTCATCACAACTTGGTCCCACTAAGGGGTTATTTCTTTAGCAGGGATGAGAAGCTTGTTGTCTATGATTACATGCCTATGGGAAGCTTATCTGCTCTCTTACATGCAAACGGTGGGGTGGGGAGGACTCCACTGAATTGGGAAACAAGGTCTGCCATTGCCCTTGGTGCTGCTCGTGGGATTGCCTACATTCATTCGCATGGCCCAACATCCTCTCATGGAAACATCAAGTCATCGAATATTCTTCTCACCAAATCTTTTGAAGCTCGTGTCTCTGACTTTGGCCTTGCTTACCTTGCTCTTCCAACCTCTACCCCAAACCGTGTTTCTGGTTATCGAGCACCAGAGATCACTGATGCGCGCAAAGTATCCCAAAAAGCTGATGTCTATAGCTTTGGTATCATGCTTTTGGAGCTTCTTACAGGGAAGGCTCCTGCTCATTCTTCACTGAATGACGAAGGGGTGGACCTCCCAAGATGGGTTCAATCTGTGGTTCAAGGTGAGTGGAATACTGATGTGTTTGACATGGAGCTTCTAAGGTACCAGAGTGTTGAGGAGGAAATGGTGAAGCTCTTGCAGCTTGCCCTTGAATGCACTGCCCAATATCCTGATAAAAGACCTTCAATGGATGTGGTGGAAAGCAAGATTGAGGAAATTTGCCATCCTAGTTTAGAGAAAGAGGAAGAGAAGAATAATGATTTTAAAGAAGCCGATAATGGACTTTCCCAACAATACTACTCTGTTGACTCGGGTGTGTCACAAGCTTGA 1920 0.488 MKSARVIEAIFFTLLTCVFAIADSDLASDRAGLVSLRSALGGRTLLWNTTQRTPCSWTGVTCTNDRVTMLRLPAMGLSGSLPSGLGNLTELQTLSLRFNALTGRIPADFVNLKALRNLYLQGNFFSGEVPDAVFALQNLVRLNLGNNNFSGEISPKFNGLTRLSTLYLERNNFTGSIPDLSVPPLDQFNVSYNSLNGSIPNRFSRLDQTAFLGTSLCGKPLQLCPGTEERKSKLSGGAIAGIVIGSVFGLLLILLLLFFLCRKRSGKNDGSVSTGKRDVEGEVSREKSVESGNSGSAVAGSVEKSEVQSSGGGDKSLVFFGNVNRVFSLDELLRASAEVLGKGTFGTTYKATLEMGVSVAVKRLKDVTATEREFREKIEQVGKMVHHNLVPLRGYFFSRDEKLVVYDYMPMGSLSALLHANGGVGRTPLNWETRSAIALGAARGIAYIHSHGPTSSHGNIKSSNILLTKSFEARVSDFGLAYLALPTSTPNRVSGYRAPEITDARKVSQKADVYSFGIMLLELLTGKAPAHSSLNDEGVDLPRWVQSVVQGEWNTDVFDMELLRYQSVEEEMVKLLQLALECTAQYPDKRPSMDVVESKIEEICHPSLEKEEEKNNDFKEADNGLSQQYYSVDSGVSQA 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00569 639 PANTHER OS05G0588300 PROTEIN 11 609 - -
Phco3g00569 639 CDD STKc_IRAK 340 603 - -
Phco3g00569 639 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Phco3g00569 639 FunFam Probable inactive receptor kinase At1g48480 409 611 - -
Phco3g00569 639 SUPERFAMILY L domain-like 47 211 - -
Phco3g00569 639 FunFam Probable inactive receptor kinase RLK902 26 181 - -
Phco3g00569 639 Gene3D Transferase(Phosphotransferase) domain 1 409 629 - -
Phco3g00569 639 MobiDBLite consensus disorder prediction 266 311 - -
Phco3g00569 639 MobiDBLite consensus disorder prediction 607 639 - -
Phco3g00569 639 Pfam Protein kinase domain 337 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00569 639 MobiDBLite consensus disorder prediction 269 287 - -
Phco3g00569 639 Coils Coil 608 628 - -
Phco3g00569 639 ProSiteProfiles Protein kinase domain profile. 334 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00569 639 SUPERFAMILY Protein kinase-like (PK-like) 338 597 IPR011009 -
Phco3g00569 639 MobiDBLite consensus disorder prediction 288 311 - -
Phco3g00569 639 FunFam pollen receptor-like kinase 1 303 408 - -
Phco3g00569 639 Gene3D Phosphorylase Kinase; domain 1 302 408 - -
Phco3g00569 639 MobiDBLite consensus disorder prediction 621 639 - -
Phco3g00569 639 Gene3D Ribonuclease Inhibitor 132 217 IPR032675 -
Phco3g00569 639 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Phco3g00569 639 Gene3D Ribonuclease Inhibitor 31 131 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00569 Phco-Chr3 4526911 4529629 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco3g00569 Pkinase 6.4e-36 CL0016