Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00556 ATGCTATTCTGCAAGAAAAGAAAGAACCTGGTGAGTGCTTCTTCCTCCAGAAAAGTTGACAAGGATGAAGCAGTGCTAGAACGCAGAATCATCAAACCAAGGTGGCTTGAGTCTTTTTTGAGGAAAACTTTCTTTAGCTCCTGCACAATTCATCCATTCCGTAAGAATGAGTTAAATAAGTATTGTATAAACTGCAATTTGTCAGTTTGCCAATATTGTGTAGCTTCAGGTCCTCATCGCCATCATAAAATACTCAAAATCTATAGACATGTTTACAAGGATGTTGTCTCTCTTGCAACTATGGAGAAGTATATTGACAGCTCACAGATCCAGCCTTACAAATGCAACAAGCGACTGGTTATTTCACTGAATCCTCTACCTCATTCTGGTTCAACAGCAAATAATGAGGCATCATGCAATACTTGCAAAAGAAAATTGACTGAACCTGATTTGTTTCGCTATTGCTCCATTTCTTGCAAGGTCAGAGCTGTTTTAAGTAAACCAGATGATTCAACTCCTCCTTTCATTTCCATCCAGACTCCTCGTCTTGCCCCTCCACAGGAAAAGCCAGAGGAAACTTCTGAACCTCAAAATCCACAGAAGAGGAAAAGAAAGGGAATACCCCATAGGGCTCCCTTCTTCTGA 645 0.4047 MLFCKKRKNLVSASSSRKVDKDEAVLERRIIKPRWLESFLRKTFFSSCTIHPFRKNELNKYCINCNLSVCQYCVASGPHRHHKILKIYRHVYKDVVSLATMEKYIDSSQIQPYKCNKRLVISLNPLPHSGSTANNEASCNTCKRKLTEPDLFRYCSISCKVRAVLSKPDDSTPPFISIQTPRLAPPQEKPEETSEPQNPQKRKRKGIPHRAPFF 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00556 214 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 31 213 - -
Phco3g00556 214 SUPERFAMILY B-box zinc-binding domain 47 89 - -
Phco3g00556 214 Gene3D Classic Zinc Finger 41 115 - -
Phco3g00556 214 CDD Bbox2 48 87 - -
Phco3g00556 214 MobiDBLite consensus disorder prediction 170 214 - -
Phco3g00556 214 Pfam B-box zinc finger 47 87 IPR000315 GO:0008270
Phco3g00556 214 ProSiteProfiles Zinc finger B-box type profile. 48 87 IPR000315 GO:0008270
Phco3g00556 214 Pfam PLATZ transcription factor 89 161 IPR006734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00556 Phco-Chr3 4359802 4367034 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Phco3g00556 PLATZ 4.7e-20 No_clan