Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00552 ATGGTGAACACTACCACCACCACCACCTACTTTCTAAATCCTCTACCCTTCGTCATTTTCCTAACCATCATCGCCCTTTTTGCAAACTCCCAAGACGACGTTTCAGTAATGCTGGCTCTCAAGAACAGCCTCAACCCGCCGGGGTGGACCGGCCCGGACCCATGCATGTGGGACCACGTCAGGTGCTCCGAAGATAAACGGGTCACCCGGATCCAAATCGGGCGCCTCAATCTCCAAGGTACTCTCCCTGCAACCCTTCACAACTTGACCCAGTTGCAACAGTTGGAGCTCCAATACAACAACATCTCGGGGCCCATTCCCTCGCTTAACGGCTTGACCAACCTCCGTGTCTTCATTGCCAGCAACAACCGCTTCTCCACAGTCCCCGCCGACTTCTTCGCCGGCATGCCACAGCTCCAGGCGGTGGAGATCGACAACAACCCGTTTGAGCCCTGGGAGATTCCTCAGACTCTCCGAAACGCTTCTGTGCTTCAGAACTTCTCTGCCAACTCTGCCAACGTCAGAGGCACTTTGCCGGATTTCTTCAGCTCCGAGGTGTTTCCTAGTTTGACCCTTTTGCACTTGGCCATCAATAACCTCGAGGGGACGTTGCCTTTGAGCTTTTCTGGCTCTCAGATTCAGTCTTTGTGGTTGAATGGGCAGAAGAGTGTTAACAGGCTTGGTGGTAGTGTTGCTGTGTTGCAGAACATGACTTTCTTGACAGAGGTTTGGTTGCATTCCAATGCTTTTACGGGTCCCTTGCCTGATTTGTCTGGGTTGAAGAGTTTGCAGGTTTTGAGTTTGAGGGATAACAGGTTTACTGGTCCAGTTCCGGCTTCGTTGGTGGGTCTCAAGACACTTGAAGTTGTGAACTTGACTAATAACTTGTTTCAGGGTCCTATGCCGGTGTTTGGCAATGGAGTTGAGGTGGATAATGATAACGATTCCAATAGTTTTTGTTTGTCAGGACCTGGTGATTGTGATCCCAGGGTGCAGGTTCTTCTTTCTGTTGTTGGGCTTATGGGGTATCCTCAAAGGTTTGGTGACAGTTGGAAGGGGAATGATCCTTGTGCTGATTGGATAGGGATTTCTTGTGGAGGAGATGGGAATATAACTGTTGTTAATTTTCAGAAGATGCAACTGAGTGGTGAGATATCCCCGGACTTGTCAAAAATTAAATCTTTGCAAAGAATAGTACTTGCGGATAACAATCTCACTGGTTCGATTCCAGTAGAGCTTACTTCTTTGCCTCGGCTTAGTCAATTGAATGTTTCAAATAATCAGCTTTACGGGAAGGTGCCGAGTTTTAGAAGTAATGTAGTTGTGAATACTAGTGGTAATGTTGATATAGGGAAGGATAAGAGTAGCCAGTCCCCTCAGGGTTTAGTGTCTCCAACGGCTTCCAATTCAAAGGGAGAAAATGGGGGTTCTGGAAATGGTGGCAACAAGTCTTCTTCCCATGTGGGAGTGATCGTGTTTTCGGTGATTGGGGCAGTGTTTGTGGTTTCTATGATTGGTTTCTTGGTTTTCTGCCTGTTTAGGATGAAGCAAAAGAAGTTGAGCAGGGTCCAGAGCCCTAATGCTCTGGTTATTCATCCTAGGCATTCTGGGTCGGATAATGAGAGTGTGAAGATAACAGTTGCAGGTTCAAGTGTCAGTGTTGGTGGTGCTAGTGAAACGCGAACCGTACCTGGCAGTGAGGCAGGAGATATCCAAATGGTTGAAGCCGGAAACATGGTAATTTCCATACAAGTTTTGAGGAATGTCACGGATAACTTCAGTGCGAAGAACATATTGGGACAAGGAGGTTTTGGAACGGTTTATAGAGGTGAACTCCATGATGGTACAAGAATTGCAGTGAAAAGAATGGAGTGTGGGGCAATAACAGGGAAGGGTGCGGCAGAATTCAAGTCTGAAATTGCTGTTTTGACAAAGGTTCGCCACCGGCATCTTGTGGCTCTTCTAGGGTACTGCTTGGATGGGAATGAGAAGCTGCTTGTGTACGAGTACATGCCTCAAGGAACATTGAGTAGGCATCTTTTCAACTGGCCAGAGGAAGGACTGGAACCACTGGAGTGGAATAGAAGATTGACAATTGCCTTAGATGTGGCAAGGGGTGTCGAGTACCTCCATGGCTTGGCCCATCAAAGCTTCATACACAGGGACTTAAAACCTTCAAACATTCTCCTTGGAGATGACATGAGGGCAAAGGTTGCAGATTTTGGTCTTGTGCGTCTTGCTCCGGAAGGAAAAGCCTCTATAGAAACAAGAATTGCAGGAACATTTGGATATTTGGCACCTGAGTATGCAGTCACTGGCCGTGTGACAACTAAAGTTGACGTGTTCAGCTTTGGGGTAATATTGATGGAGGTGATAACAGGAAGAAAAGCACTTGATGAGACTCAACCCGAGGATAGCATGCACCTTGTAACATGGTTCCGCAGAATGTCCATAAATAAGGACTCATTCCGCAAGGCCATTGACTCCACAATTGATCTCAACGAGGAAACTCTTGCCAGTATTCACACTGTAGCAGAGTTAGCTGGCCACTGCTGTGCGAGGGAGCCATATCAAAGGCCTGACATGGGTCATGCTGTTAACGTGCTTTCTTCTCTTGTTGAACTTTGGAAACCATCTGATCAGAATTCAGAAGATATATACGGCATTGACCTTGACATGTCCTTGCCACAAGCACTTAAGAAGTGGCAGGCTTATGAAGGTAGAAGTCAAATGGAGTCCTCTTCTTCATCTTCTCTTCTACCAAGCTTGGATAACACACAGACAAGTATACCTACTCGCCCATATGGATTTGCGGATTCTTTCACATCAGCAGATGGTAGGTGA 2844 0.4705 MVNTTTTTTYFLNPLPFVIFLTIIALFANSQDDVSVMLALKNSLNPPGWTGPDPCMWDHVRCSEDKRVTRIQIGRLNLQGTLPATLHNLTQLQQLELQYNNISGPIPSLNGLTNLRVFIASNNRFSTVPADFFAGMPQLQAVEIDNNPFEPWEIPQTLRNASVLQNFSANSANVRGTLPDFFSSEVFPSLTLLHLAINNLEGTLPLSFSGSQIQSLWLNGQKSVNRLGGSVAVLQNMTFLTEVWLHSNAFTGPLPDLSGLKSLQVLSLRDNRFTGPVPASLVGLKTLEVVNLTNNLFQGPMPVFGNGVEVDNDNDSNSFCLSGPGDCDPRVQVLLSVVGLMGYPQRFGDSWKGNDPCADWIGISCGGDGNITVVNFQKMQLSGEISPDLSKIKSLQRIVLADNNLTGSIPVELTSLPRLSQLNVSNNQLYGKVPSFRSNVVVNTSGNVDIGKDKSSQSPQGLVSPTASNSKGENGGSGNGGNKSSSHVGVIVFSVIGAVFVVSMIGFLVFCLFRMKQKKLSRVQSPNALVIHPRHSGSDNESVKITVAGSSVSVGGASETRTVPGSEAGDIQMVEAGNMVISIQVLRNVTDNFSAKNILGQGGFGTVYRGELHDGTRIAVKRMECGAITGKGAAEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFNWPEEGLEPLEWNRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMEVITGRKALDETQPEDSMHLVTWFRRMSINKDSFRKAIDSTIDLNEETLASIHTVAELAGHCCAREPYQRPDMGHAVNVLSSLVELWKPSDQNSEDIYGIDLDMSLPQALKKWQAYEGRSQMESSSSSSLLPSLDNTQTSIPTRPYGFADSFTSADGR 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00552 947 MobiDBLite consensus disorder prediction 447 483 - -
Phco3g00552 947 Gene3D Phosphorylase Kinase; domain 1 554 670 - -
Phco3g00552 947 Gene3D Transferase(Phosphotransferase) domain 1 671 891 - -
Phco3g00552 947 ProSiteProfiles Protein kinase domain profile. 593 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00552 947 FunFam receptor protein kinase TMK1 555 670 - -
Phco3g00552 947 PANTHER OSJNBA0070M12.3 PROTEIN 18 947 - -
Phco3g00552 947 SUPERFAMILY Protein kinase-like (PK-like) 571 877 IPR011009 -
Phco3g00552 947 SUPERFAMILY L domain-like 62 436 - -
Phco3g00552 947 MobiDBLite consensus disorder prediction 911 936 - -
Phco3g00552 947 Gene3D Ribonuclease Inhibitor 329 454 IPR032675 -
Phco3g00552 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 718 730 IPR008271 GO:0004672|GO:0006468
Phco3g00552 947 CDD STKc_IRAK 599 872 - -
Phco3g00552 947 FunFam Receptor-like kinase TMK4 31 325 - -
Phco3g00552 947 ProSiteProfiles Leucine-rich repeat profile. 91 113 IPR001611 GO:0005515
Phco3g00552 947 Gene3D Ribonuclease Inhibitor 30 327 IPR032675 -
Phco3g00552 947 Pfam Protein tyrosine and serine/threonine kinase 595 865 IPR001245 GO:0004672|GO:0006468
Phco3g00552 947 MobiDBLite consensus disorder prediction 911 947 - -
Phco3g00552 947 SMART serkin_6 593 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00552 947 FunFam Leucine-rich repeat receptor-like kinase 329 453 - -
Phco3g00552 947 FunFam receptor protein kinase TMK1 671 888 - -
Phco3g00552 947 Pfam Leucine rich repeat N-terminal domain 332 365 IPR013210 -
Phco3g00552 947 Pfam Leucine rich repeat N-terminal domain 31 63 IPR013210 -
Phco3g00552 947 SMART LRR_typ_2 112 135 IPR003591 -
Phco3g00552 947 SMART LRR_typ_2 260 283 IPR003591 -
Phco3g00552 947 SMART LRR_typ_2 416 438 IPR003591 -
Phco3g00552 947 SMART LRR_typ_2 187 210 IPR003591 -
Phco3g00552 947 ProSitePatterns Protein kinases ATP-binding region signature. 599 621 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00552 Phco-Chr3 4331373 4335004 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Phco3g00552 PK_Tyr_Ser-Thr 2.1e-45 CL0016