Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00549 ATGACCTTGGAGGGGATTTTCATTGAGCCTACCTCAACCACTGCTCCTGATCTTTCTCTTCACATAAGCCCTCCAAGCATCTCCTCTTCCTTGATTTCCAATAGCAACCACATCACCAATTATGAACCCCAAGCTAGTTTCCCTTCAAGGACTGTGTCTCAAGCCCACACAGAACTCTCTCTTGGAAGGAATTTCACTTCACCAAGACCAACACCAAGACCAACTCCAACACCTCACAGCCCTTATTATCCAGGCCAAGCCCATTTCCATCATCTTCTCCACAGCAGCAGCGCCACTACTAGTAGTAATACTGCGACAAGTGTTGCTGCAAGTACCAACACTCCCTTGAATCACATAAACTATGGAGTTTCATTGCTTGATGTGTCATCATCGGACGGCTTGAGGCCAATCAAGGGGATTCCGGTGTATCACAACCGTTCATTCCCTTTTGTGGCCATGGACCATGCTAGAGACAACAAGGATCCCCATAACAAGATGTGCTTATATCATCACGTGCCTTCTTACCCCGCTCTCTCTTCTTCATGTTCCTCTCTGTGCTCCACAACTGCTTCTTCTTCTTCACCTTCACCTTACTTTGTGGATCCCATGTCCTTCTTGAACAACGGTTCCACCTTGGCGTGTAGGGCAGCCACTGCCACAAGGTTTAATGGGTTTTCTGGCGATGCTTTCAAATCTCATCCATTGCACCAATATGGGGTAGGCTCTTCAGAAGCCTCTTCAGGGTTCATGAGATCAAGGTTTTTGTCTAAGCTTCCCAACAAGAGGAGCATGAGAGCACCGAGAATGAGGTGGACAAGTACCCTCCATGCTCGATTTGTCCATGCGGTTGAACTTCTTGGAGGCCATGAAAGAGCTACTCCAAAATCAGTTCTTGAGCTCATGGATGTGAAGGATCTAACCTTAGCTCATGTCAAAAGCCACTTGCAGATGTATCGAACTGTTAAGACCACTGACAAACCTGCAGCATCTTCAGGCCATTCAGACGGGTCTGGAGAGGATGACTTGTCTCCTATTGGCAGCACCGCCGATCGGAGCAGTCTCCGACAATTTCCCAACCACAGAGGGCGGCCGGAATGGGTGGCGCAACAAGACATGGACTACTCTTCCACCACCACTCTTTGGAGTAATTCTTCAAGTTGTGGAGAGTCGCGACAAAAAACTACTTCTAACGACATAGATGGTCTCAGATCCCCTATCCTCCTGTCACAAACAATATCAGGAGTGCATCAAATTCAGGAGTGTGATTCAACACAACAGAAGAACAACATGGCAGGTTCTAATTTGGAGTGCAAGAACCCAAGCTTGGAATTCACATTAGGAAGACCACATTGGGATGGCAAAGAGCAAGCCTAG 1374 0.476 MTLEGIFIEPTSTTAPDLSLHISPPSISSSLISNSNHITNYEPQASFPSRTVSQAHTELSLGRNFTSPRPTPRPTPTPHSPYYPGQAHFHHLLHSSSATTSSNTATSVAASTNTPLNHINYGVSLLDVSSSDGLRPIKGIPVYHNRSFPFVAMDHARDNKDPHNKMCLYHHVPSYPALSSSCSSLCSTTASSSSPSPYFVDPMSFLNNGSTLACRAATATRFNGFSGDAFKSHPLHQYGVGSSEASSGFMRSRFLSKLPNKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGHSDGSGEDDLSPIGSTADRSSLRQFPNHRGRPEWVAQQDMDYSSTTTLWSNSSSCGESRQKTTSNDIDGLRSPILLSQTISGVHQIQECDSTQQKNNMAGSNLECKNPSLEFTLGRPHWDGKEQA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00549 457 FunFam Myb family transcription factor 265 323 - -
Phco3g00549 457 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 16 455 IPR044847 GO:0000976|GO:0006355|GO:0010158
Phco3g00549 457 MobiDBLite consensus disorder prediction 324 401 - -
Phco3g00549 457 Gene3D - 266 323 - -
Phco3g00549 457 Coils Coil 454 457 - -
Phco3g00549 457 MobiDBLite consensus disorder prediction 370 401 - -
Phco3g00549 457 NCBIfam myb-like DNA-binding domain, SHAQKYF class 267 320 IPR006447 GO:0003677
Phco3g00549 457 SUPERFAMILY Homeodomain-like 264 320 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00549 Phco-Chr3 4288415 4293204 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco3g00549 None None None