Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00541 ATGTCGCATCTCTCAATGCTCCTTATTTTTGCTTTCATCAATTTCGTAGCCGCAGCGACCGAGTTCGACTTTGGAACTCTAACATTGGAAAGCCTCAAGCTTCTGGGCGACGCTCACTTTAACAACGGCACCGTAAGCCTCACGCGCGACCTTGCCGTTCCCACCTCCAGCGCCGGCAGAGCTCTGTACTCCCGTCCGGTCAGGTTCCGCCTTCCGGGAAACCGCTTTCCGGCCAGCTTCACCACCTTCTTTTCCTTCTCCATCGCCAACCTCAATCCTTCCTCCATCGGGGGCGGTCTCGCCTTCGTCCTCGCGCCGGACGACGAAACGATCGGCGACGCCGGTGGCTTTCTTGGACTTAGCGCAGCCGCCGCCGCAGTGGATGGGGGCGGGGGAAGCTTTATTGCCGTGGAGTTTGATACGCTTATGGACGTAGAGTTTAAGGACATTAATGGGAACCACGTCGGGGTGGACTTAAACAGCGTCGTTTCGAGCGAGGTTGGTGATTTGGAGAGCTTTGGGATCGATCTGAAGAGCGGTGACCTAATTAACGCGTGGATTGAGTTCGATGGATCGAGCAAAGGGTTAAGCGTGTGGGTTTCGTATTCCAATTTGAAACCGAAAGATCCCGTTTTGTCGACGAGCCTCGATGTGGATAAGTATTTGAATGATTTTATGTATGTGGGGTTCTCAGGTTCCACGCAGGGTAGCACGGAGATTCACAGAATAGAGTGGTGGAGTTTTGGTTCGTCTTTTGAAGCTGCGGCGGTGGCTGCGCCTCCGCCTCCACCGGCGGTGAGTTTGCTGAACCCGACGGCGAATGCGGTGAACTCGGCGCCTCCTTCTTTGGCTCCTTCTAATAGTGAAGAGAAAGAGAGCAAAAGCAAATCGTCTTGCCACAATGGGTTGTGTAAGCAGAATTTGGGAGCGGTTGCTGGTGTTGTTACTGCTGGGGCATTTGTTTTGGCTATTTTTGCTGGTGCATTGATTTGGTTTTACTCTAAGAAGGTTAAGCCTGTTAACAAGTTTGATTCGCTTGGTTCGGAGATCATTAAAATGCCGAAGCAGTTTACCTACAAGGAGCTGAAGTCGGCTACCAAGTGTTTCAATGCGAATAGGATCATTGGTCATGGCGCGTTTGGGACTGTGTATAAGGGGGTTTTGCCTGATAATGGGGACACTGTTGCGGTGAAGAGGTGCAGCCATAGTAGTCAGGGGAAGAATGAGTTTTTGTCTGAGTTATCTATCATTGGGAGCCTGAGGCATCGGAATCTTGTTCGGCTTCAAGGGTGGTGCCATGAAAAAGGGGAGATTCTGCTGGTGTATGACTTGATGCCTAATGGGAGTTTGGATAAGGCTTTGTTTGAGGCTAGGACACCGCTTCCCTGGTCTCACCGGCGCAAGATTTTGTTGGGCGTGGCCTCGGCCTTGGCCTACTTGCATCAAGAGTGCGAGAATCAGGTGATTCACAGGGACATCAAGACTAGTAATATAATGTTGGATGAAGGGTTCAATGCCAGGTTGGGAGATTTTGGTTTGGCGAGGCAAACTGAGCATGATAAGTCGCCGGATGCCACCGTGGCTGCTGGGACAATGGGGTACCTGGCACCCGAGTATCTCCTTACTGGAAAGGCTACAGAGAAAACTGATGTGTTTAGTTATGGTGCAGTGGTTCTTGAGGTGGCCAGTGGGAGAAGACCGATAGAGAAGGATGGCAATGGGGGTGCTAAAGGTGGCATTAGCTGCAATTTGGTAGAATGGGTATGGAGTTTGCACCGGGAAGGAAGGTTGCTATTGGCGGCTGATGCAAGGCTTGAGGGGGAGTTTGATGAGGGAGAGATGAGGAGGGTACTCTTGGTTGGGCTAGCCTGCTCTCACCCTGATCCATTGGCTCGACCTACTATGAGGGGTGTGGTTCAGATGCTGGTGGGGGAAGCTGAAGTGCCTATTGTCCCACGAACCAAGCCCTCCACTGGTTTCAGTACTTCCCACTCTTACTTACTAATGAGCTTGCAAGATAGTGTATCTGATTGTGATGGTATAATCACCATCTCTACATCCACATCAGAGAACAGCTTCGATCTTGGAGATATAGTCTGA 2100 0.5114 MSHLSMLLIFAFINFVAAATEFDFGTLTLESLKLLGDAHFNNGTVSLTRDLAVPTSSAGRALYSRPVRFRLPGNRFPASFTTFFSFSIANLNPSSIGGGLAFVLAPDDETIGDAGGFLGLSAAAAAVDGGGGSFIAVEFDTLMDVEFKDINGNHVGVDLNSVVSSEVGDLESFGIDLKSGDLINAWIEFDGSSKGLSVWVSYSNLKPKDPVLSTSLDVDKYLNDFMYVGFSGSTQGSTEIHRIEWWSFGSSFEAAAVAAPPPPPAVSLLNPTANAVNSAPPSLAPSNSEEKESKSKSSCHNGLCKQNLGAVAGVVTAGAFVLAIFAGALIWFYSKKVKPVNKFDSLGSEIIKMPKQFTYKELKSATKCFNANRIIGHGAFGTVYKGVLPDNGDTVAVKRCSHSSQGKNEFLSELSIIGSLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALFEARTPLPWSHRRKILLGVASALAYLHQECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYLLTGKATEKTDVFSYGAVVLEVASGRRPIEKDGNGGAKGGISCNLVEWVWSLHREGRLLLAADARLEGEFDEGEMRRVLLVGLACSHPDPLARPTMRGVVQMLVGEAEVPIVPRTKPSTGFSTSHSYLLMSLQDSVSDCDGIITISTSTSENSFDLGDIV 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00541 699 CDD STKc_IRAK 375 642 - -
Phco3g00541 699 ProSitePatterns Protein kinases ATP-binding region signature. 375 398 IPR017441 GO:0005524
Phco3g00541 699 Gene3D Transferase(Phosphotransferase) domain 1 445 648 - -
Phco3g00541 699 CDD lectin_legume_LecRK_Arcelin_ConA 20 252 IPR001220 GO:0030246
Phco3g00541 699 ProSitePatterns Legume lectins beta-chain signature. 135 141 IPR019825 -
Phco3g00541 699 Pfam Protein kinase domain 370 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00541 699 Gene3D Phosphorylase Kinase; domain 1 334 444 - -
Phco3g00541 699 MobiDBLite consensus disorder prediction 277 296 - -
Phco3g00541 699 PANTHER - 43 652 - -
Phco3g00541 699 FunFam L-type lectin-domain containing receptor kinase VIII.1 333 444 - -
Phco3g00541 699 FunFam L-type lectin-domain containing receptor kinase VIII.1 445 660 - -
Phco3g00541 699 ProSiteProfiles Protein kinase domain profile. 369 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00541 699 FunFam L-type lectin-domain containing receptor kinase VIII.1 18 261 - -
Phco3g00541 699 SUPERFAMILY Concanavalin A-like lectins/glucanases 18 260 IPR013320 -
Phco3g00541 699 Pfam Legume lectin domain 20 255 IPR001220 GO:0030246
Phco3g00541 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 488 500 IPR008271 GO:0004672|GO:0006468
Phco3g00541 699 SUPERFAMILY Protein kinase-like (PK-like) 351 668 IPR011009 -
Phco3g00541 699 Gene3D - 17 259 - -
Phco3g00541 699 SMART serkin_6 369 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00541 Phco-Chr3 4216814 4218913 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Phco3g00541 Pkinase 2.6e-50 CL0016