Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00529 ATGTACACGTGGCGCTGTTCTCTTAGTGGGGCGGCAAGTGGCAGTGACGTGGCGAAAAGCGCAAAGCCCTTTTCCGTGGTGGGTTTTGTTGATTTGAGAACTGTGGACCATTTCTTAGTTAATTACATCCGAGTCACCGTTGTTGTTGCTTCTCTAGCCAGCTCCTTGAGATTTGGAAAGGTTTTTGGGGTGATCGTTGCCAATTCACGAGATGGATTCAGTTTGAATGATCGAGCTTCTGTAGTTCATGGTCATGGGATCTTAGAAGGAATATTTGATACCGTGTGGAGTTTTTTTGAGGGACATGAGATTGTTGTTGGTTCAGGTCGTACTTGTATGTTTTATGGTTTGTTCTGGATTTCCAGCCAAAAGTCTTTTCGTTTGGGTATGGGCAAAAATGCATTTACTAGATCAAGGAGTGGTCTTCCCATTGGAGATGAAATATCTCTGAGTCCTGGTGTGCATTCTGTTGCAGATATTCCACTACATGATCAGTTTTCTTATGGAAATGACTATGCCTTGAAGGTAAGAAAACCATATACAATCACAAAGCAGAGAGAGAGGTGGACAGATGAAGAACACAAGAAGTTCCTTGAAGCCTTAAAGCTATATGGCAGGGCCTGGCGACGGATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATTGTTAGAGAGTCTAGTGGGAACAGCACAGTCTTGGAGGAGTCGATTGAAATTCCACCTCCACGACCAAAAAGGAAGCCAATTCATCCTTACCCTCGTAAACTGATTGAGATTCCAAAGAAAGAGATTTCCAACTCAGACCACCCTCCCAGGTCTAATTCTCTCAAGTCATCAGATTTTGGTCAAGAAAACAATTCTCCCAAGTCAGTGTTATCTACAGTTGTTTCCGAAAACCTTGGTTCCTCCGATTCAGATACTCCTACTGGAAGTTTGTCACCAGTCTCATCCATTAGCGGTGTCCCCACAAACAGGTTTCCACTTGCTGGACCCAAAACATCATTTGAGGAAGAAGGGTCTCTACCTAGTTCAGCTCATGATGAGCAACCTCTTGTGAAGCTGGAGTTTTTTCATAAAGAAAGTGTTTCTACCAAAGATGATGCAGCAGAGGAATCATCTGGTCGTACTCTAAAACTTTTTGGGACCACTCTACTGGTAACAGATACAAGCAAACCCTTTTCTCTAAGAACGGAGCCCTTCAAACCAATACCTGCTTCTGCAACATGTCTTATGCAACTTCAAAATGGGTGTTCAGATCTTGCAGAAGGTCCTGCAAGCATTGTTCCAAGGTGGACTTTTTCCCACAATGCACTATCTGTGCCACTGCACAGGGAGCCAAAAGGGAAACACCTGTACTCTAATCTTAGAGATTTTGAACATAAAGAGGTACAAAAGGAAGGATCATGGACTGGTTCAAACACTAGTTCAATTAATGATGGAGACAACACTGACAAATCAGATGATCAAGCCAAGAGTCATGTGCATTGCTTTAGCAAAAGGGATGGACAGTTACAGTTTCTTGGTCACACTAAACCAAGTGAAACATCAGCTATATTTGAGCTAAGGGTGAGACCTAAAACCTGTGGGAAAGGTTTTGTGCCATACAAAAGGTGCATGGCAGGGAGAGAAAACCAATACTCATCAGTTTGTGATGAGGAGAGGGAAGAGCAACGTATCAAGCTTTCCTTATAG 1728 0.4294 MYTWRCSLSGAASGSDVAKSAKPFSVVGFVDLRTVDHFLVNYIRVTVVVASLASSLRFGKVFGVIVANSRDGFSLNDRASVVHGHGILEGIFDTVWSFFEGHEIVVGSGRTCMFYGLFWISSQKSFRLGMGKNAFTRSRSGLPIGDEISLSPGVHSVADIPLHDQFSYGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKIVRESSGNSTVLEESIEIPPPRPKRKPIHPYPRKLIEIPKKEISNSDHPPRSNSLKSSDFGQENNSPKSVLSTVVSENLGSSDSDTPTGSLSPVSSISGVPTNRFPLAGPKTSFEEEGSLPSSAHDEQPLVKLEFFHKESVSTKDDAAEESSGRTLKLFGTTLLVTDTSKPFSLRTEPFKPIPASATCLMQLQNGCSDLAEGPASIVPRWTFSHNALSVPLHREPKGKHLYSNLRDFEHKEVQKEGSWTGSNTSSINDGDNTDKSDDQAKSHVHCFSKRDGQLQFLGHTKPSETSAIFELRVRPKTCGKGFVPYKRCMAGRENQYSSVCDEEREEQRIKLSL 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00529 575 MobiDBLite consensus disorder prediction 251 280 - -
Phco3g00529 575 FunFam protein REVEILLE 6 isoform X1 188 236 - -
Phco3g00529 575 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 181 235 IPR017930 -
Phco3g00529 575 SUPERFAMILY Homeodomain-like 180 234 IPR009057 -
Phco3g00529 575 MobiDBLite consensus disorder prediction 242 360 - -
Phco3g00529 575 NCBIfam myb-like DNA-binding domain, SHAQKYF class 184 233 IPR006447 GO:0003677
Phco3g00529 575 SMART sant 185 233 IPR001005 -
Phco3g00529 575 CDD SANT 188 231 IPR001005 -
Phco3g00529 575 Gene3D - 188 235 - -
Phco3g00529 575 PANTHER SWI/SNF COMPLEX-RELATED 158 486 - -
Phco3g00529 575 MobiDBLite consensus disorder prediction 281 335 - -
Phco3g00529 575 MobiDBLite consensus disorder prediction 475 504 - -
Phco3g00529 575 Pfam Myb-like DNA-binding domain 186 229 IPR001005 -
Phco3g00529 575 ProSiteProfiles Myb-like domain profile. 181 231 IPR001005 -
Phco3g00529 575 ProSiteProfiles SANT domain profile. 184 235 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00529 Phco-Chr3 4102931 4107481 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco3g00529 Myb_DNA-binding 1.5e-13 CL0123