Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00522 ATGGAGCAGGAACAACAAAACCTTGAAAGCTTCTTAACATGGGCAGCACAACTTGGAATATCGGACTCAACAACACACACCGACCAACCTCAACACTCTCCTTCCTCATGTTTGGGTTCTTCTTTATGTGTCGCTCATTTTCCTCACTCTGGCGGGAGAGGTTTGGGTGCTGTGAGAGACCTTAGGAGGGGGGAAATTGTTCTCAGCGTTCCAAAATCTGCTTTAATGACAAGAGAGAATGCTATGGAAGATAAAAAACTCTGTTTTGCTGTCAATAGACACTCTTGTCTCTCCCCAGCTCAGATATTGATCGTTTGTTTGCTGTATGAAATGTGTAAAGGGAAGACTTCAAGGTGGCATCCTTACCTCATGCATTTGCCCCACACTTATGACATACTAGCCATGTTTGATGAATTTGAGAAGCGTGCTCTGCAAGTGGATGAAGCTGTGTGGGTCACTGAAAAAGCTATACTAAAGGCCAAATCAGAGTGGAAAGAAGCTCATGCTTTGATGGAAGATCTCATGTTTAGGCCCCAGTTTTTAACATTTAAGGCTTGGGTTTGGGCTGCTGCAACGATATCTTCTCGAACATTGCATGTACCATGGGATGAAGCCGGGTGTTTATGCCCCGTGGGTGACTTGTTTAATTATGATGCACCTGGAGAGGAGTCATCTGACATTGAGGATTTAGAACATTTGCTATCAAACTCTTCCATTCACGATACAAACTTATTAAATGGAGACAAGAATATAGTGGTAGATGCAGAACAGCTTGATTCTCATTCTCAGAGATTAACTGATGGCGGGTTTGAGGAAAATGTTAATGCATATTACTTCTATGCTAGGGCACATTACAAGAAAGGCGATCAGGTTCTATTATGCTATGGAACTTACACAAATTTGGAGCTTCTTGAACACTATGGCTTTCTCCTACAAGAAAATCCAAATGACAAAGTTTTTATCCCTTTGGATCCAGCTGTATATTTTTCCACTTCATGGTCTATGGAATCACTCTATATCCATCATAATGGGAAGCCTTCATTTGCACTACTTGCTGCATTGCGGTTGTGGGCAACCCCTCAAAACAAGAGGAAGTCTGTCGGACATCTTGTGTATTCTGGTTCTCAACTGTCTACAGACAATGAAATTTTCATCACGAAATGGCTGTCCAAAACTTGTGCTACTGTGTTAAAGAATCTGCCAACATCTATCGATGAAGACACATTGCTCCTGAATGCAATGGACAGTAGCCAAGATTTTTTCACTTTCATGGAGATCACAAAACTTATGTCTTCCAAGGATGAGATCTATACCTTCTTAGAAACACATAATATGAGGGATGCACATAGTTTCACTGAAGTAATTTTATCTAGAAAAGCAAGAATGTCCATGGATAGGTGGAAATTAGCTGTCCAATGGAGACTGAAGTATAAGAAAGTCCTTTTTGATTGTATCTCTTATTGCAATGAAATAATCGATTCTTTCATAAAATAA 1494 0.4043 MEQEQQNLESFLTWAAQLGISDSTTHTDQPQHSPSSCLGSSLCVAHFPHSGGRGLGAVRDLRRGEIVLSVPKSALMTRENAMEDKKLCFAVNRHSCLSPAQILIVCLLYEMCKGKTSRWHPYLMHLPHTYDILAMFDEFEKRALQVDEAVWVTEKAILKAKSEWKEAHALMEDLMFRPQFLTFKAWVWAAATISSRTLHVPWDEAGCLCPVGDLFNYDAPGEESSDIEDLEHLLSNSSIHDTNLLNGDKNIVVDAEQLDSHSQRLTDGGFEENVNAYYFYARAHYKKGDQVLLCYGTYTNLELLEHYGFLLQENPNDKVFIPLDPAVYFSTSWSMESLYIHHNGKPSFALLAALRLWATPQNKRKSVGHLVYSGSQLSTDNEIFITKWLSKTCATVLKNLPTSIDEDTLLLNAMDSSQDFFTFMEITKLMSSKDEIYTFLETHNMRDAHSFTEVILSRKARMSMDRWKLAVQWRLKYKKVLFDCISYCNEIIDSFIK 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00522 497 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 306 489 IPR036464 -
Phco3g00522 497 Gene3D - 329 495 IPR036464 -
Phco3g00522 497 Pfam SET domain 52 296 IPR001214 GO:0005515
Phco3g00522 497 Gene3D set domain protein methyltransferase, domain 1 4 310 - -
Phco3g00522 497 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 7 422 - -
Phco3g00522 497 FunFam Protein SET DOMAIN GROUP 40 8 310 - -
Phco3g00522 497 SUPERFAMILY SET domain 7 314 IPR046341 -
Phco3g00522 497 Pfam Rubisco LSMT substrate-binding 345 481 IPR015353 -
Phco3g00522 497 CDD SET_LSMT 41 310 - -
Phco3g00522 497 ProSiteProfiles SET domain profile. 40 296 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco3g00522 SET 3e-08 No_clan