Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00512 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTTTGAATTCAGAGCTATGGCATGCATGCGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTCTATTTCCCTCAAGGTCATAGCGAGCAGGTTGCTGCCACAACTAACCGAGAAGTGGATGGTCACATACCCAATTACCCGAGTTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACGCTGCAGCCATTGACCCCGCAAGAGCAGAAGGATACGTTTCTTCCCATGGAGTTGGGCATTCCAAGTAAGCAGCCTTCAAATTATTTTTGCAAGACATTAACGGCAAGTGACACCAGCACGCATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCTCAGCAACCACCTGCGCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTCCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACGACTGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTAGTGGCTGGGGATTCTGTGCTTTTCATATGGAACGAAAAGAATCAGCTTCTTTTGGGAATACGAAGAGCCAATCGACCGCAAACTGTCATGCCATCTTCAGTTCTATCCAGTGATAGTATGCACATTGGGCTTCTTGCAGCTGCTGCTCATGCTGCAGCAACTAATAGCTGCTTTACAGTGTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGAGTGTCTGTTGGTATGCGTTTTAGGATGCTTTTCGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACCATAACTGGCATAAGTGACCTGGATCCTGTTCGTTGGCCGAATTCTCATTGGCGGTCTGTTAAGGTTGGCTGGGATGAATCAACAGCAGGAGAGAGGCAGCCACGAGTATCATTGTGGGAAATTGAGCCTTTGACAACATTTCCAATGTATCCATCACTATTTCCTCTCAGATTGAAACGGCCATGGCATCCTGGCACCTCTTCTTTTCATGATGGCAGAGATGAAGCGACGAATGGGCTAATCTGGCTGAGGGGTGGACCTGGAGACCAAGGTCTCAATTCCCTGAGTTTTCAAGGGTCTGGTTTGTTGCCATGGATGCAGCAGAGAATGGATCCAACTTTGCTTGGAAACGATCATAATCAGCAGTACCAAGCCATGTTTGCATCTGGTTTGCAGAACTTAGGCAGTGGAGATCTAATGAGACAACAAATGATGAATTTTCAACAGCCTTTCAATTATCTTCAACAATCAGGAAACCCCAATCCTTCTTTGCAGCTTCAGCAACCACAATCAATTCAGCAATCCGTATCTTCTAACAATATCCTACAGCCACAAGCCCAAGTATTGGCAGAGAACCTGTCTCAGCATCTCCTTCAGAAATCACACAATCGCGAAGACCAAACACAGCAGCAGCACACTTATCAAGATACGGTTTTACTTCATAGTGATCAGCTCCATCAAAGGCAACACTCTGGTTTACCTTCACCATCATATTCAAAACCAGATTTCTTAGATTCAAGCATGAAGTTCCCTGCTACGGTTTCACCAGGACAAAATATGATGAGTTCACTTTGTCCTGAAGGGAGTGGTAGTCTCTTGAATTTATCCAGAAGTGGTCAGTCAATGCTGACTGAACAGTTACCCCAACAATCATGGGCCCCAAAGTTTACACCATTGCAGGTCAATACCTTTGGCAACTCAATGCCACATGTGCAATATTCTGGAAAAGATACCGCAATGGTGTCACCACATTGTAACTCAGACACCCAAAATCCTATTCTATTTGGTGTCAACATTGATTCATCTGGCCTTCTGCTCCCTACCACGGTCCCTCGTTATACCACCGCATCAGCTGATACTGATGCATCAGCAATGCCATTAGGGGAGTCTGGATTCCAAGCTTCTCTATATCCTTGCGTCCAAGATTCATCAGAGTTGTTGCGAAGTGCAGGGCAAGTTGACCCTCAAAACCAGACACGAACATTTGTCAAGGTTTACAAATCAGGGTCGGTAGGGCGCTCACTTGACATTTCCCGGTTCAGCAGTTACCATGAGCTGAGGGAGGAGTTGGCACAGATGTTTGGTATTGAGGGGAAATTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTACATCAAAATACTTTCACCTGAAGATATCCAGAAAATGGGAGAACAAGCAGTAGAATCCCTTGGTCCAAGTTCAGGACAGAGGCTGAATAGCACTGGTGCAGATTCCCATGAAATTGTTTCTGGACTTCCATCAATAGGCTCCCTTGAATACTGA 2529 0.4587 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGRDEATNGLIWLRGGPGDQGLNSLSFQGSGLLPWMQQRMDPTLLGNDHNQQYQAMFASGLQNLGSGDLMRQQMMNFQQPFNYLQQSGNPNPSLQLQQPQSIQQSVSSNNILQPQAQVLAENLSQHLLQKSHNREDQTQQQHTYQDTVLLHSDQLHQRQHSGLPSPSYSKPDFLDSSMKFPATVSPGQNMMSSLCPEGSGSLLNLSRSGQSMLTEQLPQQSWAPKFTPLQVNTFGNSMPHVQYSGKDTAMVSPHCNSDTQNPILFGVNIDSSGLLLPTTVPRYTTASADTDASAMPLGESGFQASLYPCVQDSSELLRSAGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLGPSSGQRLNSTGADSHEIVSGLPSIGSLEY 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00512 842 MobiDBLite consensus disorder prediction 468 492 - -
Phco3g00512 842 FunFam Auxin response factor 292 364 - -
Phco3g00512 842 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Phco3g00512 842 Gene3D - 292 364 - -
Phco3g00512 842 ProSiteProfiles PB1 domain profile. 716 800 IPR000270 GO:0005515
Phco3g00512 842 MobiDBLite consensus disorder prediction 809 828 - -
Phco3g00512 842 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 805 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco3g00512 842 SMART B3_2 128 230 IPR003340 GO:0003677
Phco3g00512 842 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Phco3g00512 842 CDD B3_DNA 127 228 IPR003340 GO:0003677
Phco3g00512 842 FunFam Auxin response factor 711 805 - -
Phco3g00512 842 Pfam AUX/IAA family 713 800 IPR033389 -
Phco3g00512 842 SUPERFAMILY CAD & PB1 domains 714 790 - -
Phco3g00512 842 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Phco3g00512 842 Gene3D - 712 805 - -
Phco3g00512 842 Gene3D - 126 229 IPR015300 -
Phco3g00512 842 FunFam Auxin response factor 126 230 - -
Phco3g00512 842 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00512 Phco-Chr3 3965325 3975534 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco3g00512 AUX_IAA 1e-07 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00512 3 3965325 3975534 Phco3g00512 3 3965325 3975534 ECH
Phco11g01559 11 11902527 11909050 Phco3g00512 3 3965325 3975534 PCT