Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00489 ATGGCAAAGGGTCGCACAAGCAACACTTACGAAGAGGCTAGAAAACAAAGACTTGAAGAGAACAAGAAGAGGTTTGAGGATTTGGGAATTTCAAGGATTTCAAAAAATTTGACTGAGATCACAAGTTCTGCAAAGAAGAGAGAGCATCATGTTCCTAAACTGCAACCTAAGAAGACAAATGGTGAAGTGGAACCTAGACGATCTTCACGTGTGCGAAACCCAGTTGCTTCTTACCAGGAAGATGTGAGCATACACCTTCCAGCTTTGCGGAAGAGGTCAAGATCAAATTCTTCGACATGGGGAAGTTACATTGCGAGGCCTTTAGATGAAATCAAAGAAGCTACAGAAGAGGAAAGACTCTCTGCTCTGGAGGCCGCGGAGGCACTCCAAATCAATATGAACTCTTCAAATCCCTCATTTATCAAGTCCATGGTTCGGTCTCACGTTTATAGCTGCTTTTGGTTGGGCCTTCCTTCTAAATTTTGTGAGGAACATCTTCCAAAAACTGTATTTGACATGGTTTTAGAAGATGAAAATGGCTCAGAATACGAGGCTGTTTACATTGGCAACAGAAGTGGACTTAGCGGTGGATGGAGAGCATTTGCATTGGATCATAAACTGGATGATGGAGATGCCCTTGTTTTTGAATTGGTTGAAGCTTCCAGATTTAAGATTTATATTGTTAGAGCATTTCCAAATTTAGTTGAAGAGAAGGGAAAGGATATTTTAGTTGAAGAAGGAAATATGCATACAACCAAAGTACCGAAAGCTAAATATAATCTTGAGTCAGAATCCAAGACTAAAAAGCCAAGACAGGCAGCTGCATATGAAACTAATGAATCAGAGAGTTCTCAGGAGCACATTGACAAAGAAGTCAAACCACAGGGTCTAAATTCAACTAAGCAAACTAAAATCTCTAAGAAAAAAACACAGAAGAAATCTATACTTCCGGCTACTGCAGATTCAAAAGGAAAAGTGCAAATGAAAACTGAGAAACCAAAGGTGTCTCTGGAGCTTTCAAACAAGACAAGGAAGTCAAAGGCTATCAATGAAATTGATGACTCAGGCGAGTTAGAGGAAAAAAGTTTTGCTCATGATGCTGATAGGAAGTTAGAAAAGGTTGAACTAGTTGAAGAAGCAAGCAAATGTGTGACACAGAAAGCTAGAAAAAAAACAGCTCCCAAGTTTTTCAGAAAGAAAGCATAA 1206 0.3947 MAKGRTSNTYEEARKQRLEENKKRFEDLGISRISKNLTEITSSAKKREHHVPKLQPKKTNGEVEPRRSSRVRNPVASYQEDVSIHLPALRKRSRSNSSTWGSYIARPLDEIKEATEEERLSALEAAEALQINMNSSNPSFIKSMVRSHVYSCFWLGLPSKFCEEHLPKTVFDMVLEDENGSEYEAVYIGNRSGLSGGWRAFALDHKLDDGDALVFELVEASRFKIYIVRAFPNLVEEKGKDILVEEGNMHTTKVPKAKYNLESESKTKKPRQAAAYETNESESSQEHIDKEVKPQGLNSTKQTKISKKKTQKKSILPATADSKGKVQMKTEKPKVSLELSNKTRKSKAINEIDDSGELEEKSFAHDADRKLEKVELVEEASKCVTQKARKKTAPKFFRKKA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00489 401 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 42 230 IPR044837 -
Phco3g00489 401 MobiDBLite consensus disorder prediction 257 275 - -
Phco3g00489 401 SMART B3_2 140 231 IPR003340 GO:0003677
Phco3g00489 401 Coils Coil 112 132 - -
Phco3g00489 401 Coils Coil 8 28 - -
Phco3g00489 401 SUPERFAMILY DNA-binding pseudobarrel domain 135 229 IPR015300 -
Phco3g00489 401 MobiDBLite consensus disorder prediction 41 69 - -
Phco3g00489 401 MobiDBLite consensus disorder prediction 8 25 - -
Phco3g00489 401 ProSiteProfiles B3 DNA-binding domain profile. 140 231 IPR003340 GO:0003677
Phco3g00489 401 Gene3D - 114 231 IPR015300 -
Phco3g00489 401 Pfam B3 DNA binding domain 140 228 IPR003340 GO:0003677
Phco3g00489 401 MobiDBLite consensus disorder prediction 1 25 - -
Phco3g00489 401 MobiDBLite consensus disorder prediction 39 72 - -
Phco3g00489 401 MobiDBLite consensus disorder prediction 325 365 - -
Phco3g00489 401 CDD B3_DNA 138 229 IPR003340 GO:0003677
Phco3g00489 401 MobiDBLite consensus disorder prediction 255 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00489 Phco-Chr3 3699117 3711685 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco3g00489 B3 3.8e-17 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00489 3 3699117 3711685 Phco3g00489 3 3699117 3711685 ECH