Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00488 ATGTATCTTTCAAAGGGTTGTAAGTGTGAAGAAGTTGTTCTGCTGTGCTTGTGTTTCTACTGCTATTTTCTATTTGCTACTGCTTTGATCACTGATCCCACTGAAGTTGACGCATTAAGAACCATAAAGGGAAGTTTGATTGATACTAATGGAAATTTGAGCAACTGGGATCGTGGAGATCCTTGTACATCTAACTGGACAGGAGTCATGTGCTCGGATACAACGTTAGTCGATGGCTATCTACATGTTAGAGAACTGCATTTACTGAACATGAACTTGTCTGGAACTTTGGCACCAGAGATTGGCCGCTTATCTTATCTGGAAGTGTTGGATTTTATGTGGAATGACATAACTGGGAGCATACCGAAGGAAATTGGCTTTATCAATCCTTTGAAACTCTTACTCCTGAATGGAAATCAGTTAACAGGTGAGTTACCAGAAGAGCTTGGCTTTCTTCCATTCCTGATTCGATTCCAAATAGATCAGAACAATATCACAGGACCTATACCTTTATCATTTGCAAAACTGAACACCACTGTACATTTTCACATGAACAATAATTCACTTAGTGGGAAAATACCACCACAACTTTCCAGCTTAGGAAGCCTTCTTCACCTTCTTCTTGACAACAACAAATTGACCGGAGATCTTCCCTCTGAGCTCTCTGAGATGCCAAGCTTAAAGATTCTTCAACTTGATAACAACAACTTTGGTGGAAATAGCATTCCACATTCTTATGCAAACATGTCAAAATTGATAAAACTGAGTCTTAGGAACTGCAACTTGCAAGGACCAATTCCTGATTTGAGCACGATACCACGCCTAACTTATCTTGACCTCAGTTTCAATCAGTTCAATGAATCAATTCCAACTAATAAGCTTTCAGACAATATCACAACCATTGATTTGTCAAACAATGATCTTATTGGAACTATTCCATCCTACTTTTCTCGTCTTCCACGTCTTCAAAAGCTGTCAATTGCAAACAATTCATTGAACGGAAGTGTTCCTTCAACCATTTGGCTAGACAGGATTTTAAATGGATCAGAAATGCTTCACTTGGACATGCAAAGGAATCAATTTACAAGCATATCAGGCAGTACAAATCTTCCTCCAAATGTCACCCTCTGGCTAGAGGGAAATCCTATGTGCTCAAATAATAACAGCTTAGCTCAGTTCTGCGGATCTGAAAGTGACAGTAGCATCAATGGTAACTTCAGTGTTAGCTGTCCCACCCAAGCATGCCCCCCTCCCTATGAATATACAGTGGACTGTTTCTGTGCTGCCCCGTTGGTTGTTAATTATCGATTAAAAAGTCCAGCATTTTCAGATTTCCGCACGTACATGAATGCATTTCAGAGCATGATGTCAAGGGGTCTTAAAATACACATTATTCAGTTCCATATTAACAAATTTGAATGGGAAGAAGGTCCTCGGTTGGGAATGAACTTGAAGCTTTTTCCTATGTATGTTGATGATAACAGCTCTCATGTTTTCAATACAAGTGAGGTTCTTCGGCTCAGGAACTTGTTCTTAGACTTTGATCTTCCAACTAATGACTTGTTCGGACCTTTTGAGCTTCTAGACTTCATTCTCCTGGATCCTTACAGAGATGTGACTGTTACCTCTCCGAGTTCAGGGATCAGCAAAGGAGCACTGGCTGGAATAGTCTTAGGTGCAATTGCCTTTGTGGTTACTTTTTCTGCAATTGTTACCATTCTCGTATTGAGATTACGTTTGAGAGATACACCTTCCAAACGGACAAAAGCAACTAGGGTCTCAATAAAAATTGAAGGTATAAGATCATTTTATTATGAAGAAATGCAAGCCGCTACAAACAATTTTAGTGACTCTGCTCGAATTGGACAAGGGGGGTATGGGAGGGTTTTTAAAGGTGTTCTTCCTGATGGCACTGTTGTTGCCATAAAACGTGCACAGGAGGGTTCCCTGCAAGGTGAGAAGGAGTTTCTTACAGAAATAGAGTTGCTATCAAGGCTACATCACCGCAACCTTGTGTCTCTGATTGGATACTGTGATGAAGAGGGTGAACAGATTTTGGTTTATGAATACATGCCAAATGGAACCCTAAAGGATCACCTTTCTGTTTATTCAGAAAAACCTCTTACTTTTTCCATGAGGTTGAAGATTGCTCTAGGGTCAGCTAAAGGTCTTGTGTATCTGCACACGGAAGTAGATCCTCCAATATTTCACCGAGATGTCAAGGCCACCAATATATTATTGGACTCCAAGTTCACTGCAAAAGTTGCTGACTTTGGACTTTCACGACTTGCCCCAGTCCCAGATACAGAAGGAAACGTGCCTGGTCATGTATCTACGTTGGTAATGGGAACCCCGGGTTATATTGATCCAGAGTACTTCTTAACTCACAAATTGACTGACAAGAGTGATGTTTATAGTATTGGTGTTGTATTTCTAGAACTTGTGACTGGGAGGCCACCAATCTTTCATGGCGAAAATATTATCAGACATGTTAGTATGGCATACGAATCTGGTGGATTGTTTTCAGTTATTGATAAACGTATTGGCTCTTATCCTTCAGAATATGTGGAGAAGTTTTTGACGTTGGCCTTAAAGTGTTGCAAAGATGCACCAGATGAGCGACCTAAAATGGCAGAAGTGGCTAGAGAGCTTGAAAACATCTGTTCAATGTTACCCGAGACCAACGCCGTGGAAGCAGAACATGGGACAAGTGGTTCTCGAAGAATATTCGGTTCACAACCTTCATCATCTGCTACCAGGACTCCTTTTGTTTCAGAAGATGTGTCTGGTAGTGACCTTGTCAGTGGAAAGATGCCCACCATTAGGCCCAGATAA 2835 0.4081 MYLSKGCKCEEVVLLCLCFYCYFLFATALITDPTEVDALRTIKGSLIDTNGNLSNWDRGDPCTSNWTGVMCSDTTLVDGYLHVRELHLLNMNLSGTLAPEIGRLSYLEVLDFMWNDITGSIPKEIGFINPLKLLLLNGNQLTGELPEELGFLPFLIRFQIDQNNITGPIPLSFAKLNTTVHFHMNNNSLSGKIPPQLSSLGSLLHLLLDNNKLTGDLPSELSEMPSLKILQLDNNNFGGNSIPHSYANMSKLIKLSLRNCNLQGPIPDLSTIPRLTYLDLSFNQFNESIPTNKLSDNITTIDLSNNDLIGTIPSYFSRLPRLQKLSIANNSLNGSVPSTIWLDRILNGSEMLHLDMQRNQFTSISGSTNLPPNVTLWLEGNPMCSNNNSLAQFCGSESDSSINGNFSVSCPTQACPPPYEYTVDCFCAAPLVVNYRLKSPAFSDFRTYMNAFQSMMSRGLKIHIIQFHINKFEWEEGPRLGMNLKLFPMYVDDNSSHVFNTSEVLRLRNLFLDFDLPTNDLFGPFELLDFILLDPYRDVTVTSPSSGISKGALAGIVLGAIAFVVTFSAIVTILVLRLRLRDTPSKRTKATRVSIKIEGIRSFYYEEMQAATNNFSDSARIGQGGYGRVFKGVLPDGTVVAIKRAQEGSLQGEKEFLTEIELLSRLHHRNLVSLIGYCDEEGEQILVYEYMPNGTLKDHLSVYSEKPLTFSMRLKIALGSAKGLVYLHTEVDPPIFHRDVKATNILLDSKFTAKVADFGLSRLAPVPDTEGNVPGHVSTLVMGTPGYIDPEYFLTHKLTDKSDVYSIGVVFLELVTGRPPIFHGENIIRHVSMAYESGGLFSVIDKRIGSYPSEYVEKFLTLALKCCKDAPDERPKMAEVARELENICSMLPETNAVEAEHGTSGSRRIFGSQPSSSATRTPFVSEDVSGSDLVSGKMPTIRPR 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00488 944 FunFam Predicted protein 173 394 - -
Phco3g00488 944 ProSiteProfiles Protein kinase domain profile. 615 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00488 944 FunFam Leucine-rich repeat receptor-like kinase 34 152 - -
Phco3g00488 944 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Phco3g00488 944 SMART serkin_6 615 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00488 944 Gene3D Phosphorylase Kinase; domain 1 585 690 - -
Phco3g00488 944 MobiDBLite consensus disorder prediction 906 928 - -
Phco3g00488 944 SUPERFAMILY L domain-like 44 404 - -
Phco3g00488 944 Gene3D Ribonuclease Inhibitor 34 152 IPR032675 -
Phco3g00488 944 Gene3D Ribonuclease Inhibitor 295 387 IPR032675 -
Phco3g00488 944 Gene3D Ribonuclease Inhibitor 154 222 IPR032675 -
Phco3g00488 944 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 691 900 - -
Phco3g00488 944 PANTHER RECEPTOR-LIKE PROTEIN 55 42 887 - -
Phco3g00488 944 Gene3D Transferase(Phosphotransferase) domain 1 691 903 - -
Phco3g00488 944 MobiDBLite consensus disorder prediction 900 944 - -
Phco3g00488 944 SUPERFAMILY Protein kinase-like (PK-like) 600 896 IPR011009 -
Phco3g00488 944 CDD STKc_IRAK 621 887 - -
Phco3g00488 944 Gene3D Ribonuclease Inhibitor 223 294 IPR032675 -
Phco3g00488 944 Pfam Protein kinase domain 616 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00488 944 ProSitePatterns Serine/Threonine protein kinases active-site signature. 735 747 IPR008271 GO:0004672|GO:0006468
Phco3g00488 944 FunFam Leucine-rich repeat protein kinase family protein 579 690 - -
Phco3g00488 944 ProSitePatterns Protein kinases ATP-binding region signature. 621 643 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00488 Phco-Chr3 3683961 3697460 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Phco3g00488 Pkinase 5.6e-46 CL0016