Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00482 ATGGCCTTCGTCACCACTCCTAAACTACACCTGCAATTCCACGTTGCATTTGAGACCTGGTTCTGTTGTGTTGTTCCCGCAAGTGGGGTTCATTCTTCTTGTACTAAGCTTTCAGTAAGAAGGAGGGTTGGTGTGTTCTGGGTTCCTGGGATGTATCTTTCAAAGGGTTGTAGGTGTGAAGTTGTTCTCTGTTTGTGGTTTTGCTGCTATTTCCTATTGGCTGCTAGTAAGGTCACTGACCCCACAGAAGTTGAGGCATTGAGAAGCACAAAGAGAAGTTTGTTTGATATTAATGGAAATTTGAGCAGCTGGGATCGTGGAGACCCATGTACATCCAACTGGACAGGGGTTATGTGCTCCAATACAACATTAGCCGATGGCAATCTACATGTTCTACAATTGCAACTACTGAATTTGAACCTGTCTGGAACTTTGGCACCAGAGATCGGCAACTTATCTTATTTGGAAATACTGGACTTTATGTGGAATAACATAAGTGGGAGTATACCGAAGGAGATTGGCAATATCAAAACTTTGAAACTCTTACTCCTAAGTGGAAATAAACTAACAGGGGATCTTCCTGAAGAGCTTGGCTATCTTCCAGTGCTGAACAGAATACAAATTGACGAGAACAATATTACAGGATCCATACCACTATCATTTGCAAACCTGAACAGCACAAAACACTTCCACATGAACAACAATTCACTTAGTGGACAAATCCCAGCAGAGCTTTCCAAATTAGGAAGCCTTATTCACCTTCTTCTTGACAACAATAAATTGACAGGAAATCTCCCATCCGAGCTCTCTGAGACGCCAAGCTTAATGATACTTCAACTCGATAACAATAACTACGATGGAAATAGCATACCAGAATCTTATGCCAACATGTCAAAATTGTTGAAATTAAGCCTTAGGAACTGCAACTTGAAAGGACCAATTCCTGATTTCAGCAGGATACCACACCTTACTTACCTTGACCTTAGTTTCAATCAGTTGAATGAATCAATTCCTACCAATAAGCTATCAGACAATATGACAACCATTGACTTATCAAACAACAAGCTCAATGGAACAATTCCATCCTACTTTTCTGGTCTTCCACGTCTTCAGAAATTGTCAGTTGCAAACAATTCAATTAGTGGTACTGTTCCTTCTACCATTTGGCAAAACAGGACTTTAAATGCAACCGAGGAACTTATCTTGTACATGCAGCATAATCAACTTACAAGCATATCAGGCACTACAAATCTTCCTCCAAATGTCACACTTATGCTTGAGGGAAATCCTGTATGTTCGAATAATAACTCCTTAGTTCAGTTCTGTGGACGTGAAAGTGACAATGACAAGGATGGAGGCTCCACTGTTGTCTGTCCAAGCCAAGGATGCCCCCCTCCTTATGAATACACTGTGGAGTGTATCTGTGCTGCCCCATTGATTGTTCACTATCGGTTGAAAAGTCCAGGTTTTTCAGATTTCCGTGCATATGTGAAAGAATTTGAGAACTTCCTGACAGATGGTCTTAGTGTGCATACTAATCAGCTGTTCATTGAGCGTTTTACATGGGAAGAAGGGCGGTTGAGAATGAACTTGAAGCTTTTTCCAGAATATGTTGACAATACAAGTTCTCGTGAGTTCAATACAAGTGAGGTTACTCGGATTAGGGACATGTTCAGAGAATGGGATATTCATGACAGCGACTTTTTTGGTCCTTATGAACTCTTGGACTTCATTCTACTGGATCTTTACAACGAGGCGCTTACTCCCTCTTCAAGTTCAGGGATAAGCAAAGGTGCACTGGCTGGAATAATCTTAGGTGCAATTGCATGTGCAGTTACATTATCTGCAATTGTTTCCATTCTTATTTTGAGAATACGCTTGAGAGATTATCGTGCACTTTCCAAGCGGCGTAACGCATCTAGGATCTCGCTAAAAGTTGAAGGTGTAAGATCATTTGATTACAAAGAAATGGCCTTGGCTACAAAAAATTTTAGTGAGTCTGCTCAAATTGGAGAAGGGGGTTATGGGAAGGTTTATAAAGGTCGTCTTTCTGATGGCACTGTTGTGGCCATAAAACGTGCACAGGAGGGTTCACTGCAAGGTGAGAGGGAGTTCCTTACAGAAATAGAATTGCTATCAAGGCTACACCATCGCAACCTTGTGTCTCTGATTGGATACTGTGACGAAGAGGGAGAACAGATGTTAGTCTATGAATATATGCCAAATGGAACCCTAAGGGATCACCTTTCTGCTTATTCAAAAGATGTTCTTAGTTTTTCTATGAGGTTAAAGATTGCTCTAGGATCAGCAAAAGGTCTTCTATATCTACACACAGAAGCTAATCCTCCAATATTCCACCGAGACGTGAAGGCCAGCAATATATTATTGGACTCTAGGTACACAGCAAAAGTTGCCGATTTTGGACTTTCACGACTTGCCCCAGTTCCAGATATTGAAGGAAATGTACCTGCTCATGTATCCACAGTGGTAAAGGGGACCCCGGGTTACCTTGATCCAGAGTACTTCTTAACACGTAATTTGACTGACAAAAGTGATGTTTACAGTCTGGGTGTTGTATTTTTGGAACTTTTGACTGGAAGGCCACCAATCTTTCATGGTGAAAATATAATTAGACAGGTTAATATGGCATACCAATCTGGTGGAATTTCTCTGGTTGTTGATAAACGTATTGAGTCTTATCCATCTGAGTATGCCGTGAGATTTTTGACTTTAGCCTTAAAGTGTTGCAAAGATTTACCAGATGAGAGGCCTAAAATGGCAGAAGTGGCTAGAGAGCTTGAATACATCTGTTCTATGTTACTTGAGCCAGATTCCAAGGGAGCTCTATATGTTACAAGTGATTCTTCAAGTGCAATATTCAGTTCACAACCTTCATCATCTACTATGGAGACTCCTTTTATTTCAGGAGACGTGTCAGGTAGTGACCTTGTCAGTGGAAGTGTACCAACCATCAAGCCAAGATAG 2985 0.4104 MAFVTTPKLHLQFHVAFETWFCCVVPASGVHSSCTKLSVRRRVGVFWVPGMYLSKGCRCEVVLCLWFCCYFLLAASKVTDPTEVEALRSTKRSLFDINGNLSSWDRGDPCTSNWTGVMCSNTTLADGNLHVLQLQLLNLNLSGTLAPEIGNLSYLEILDFMWNNISGSIPKEIGNIKTLKLLLLSGNKLTGDLPEELGYLPVLNRIQIDENNITGSIPLSFANLNSTKHFHMNNNSLSGQIPAELSKLGSLIHLLLDNNKLTGNLPSELSETPSLMILQLDNNNYDGNSIPESYANMSKLLKLSLRNCNLKGPIPDFSRIPHLTYLDLSFNQLNESIPTNKLSDNMTTIDLSNNKLNGTIPSYFSGLPRLQKLSVANNSISGTVPSTIWQNRTLNATEELILYMQHNQLTSISGTTNLPPNVTLMLEGNPVCSNNNSLVQFCGRESDNDKDGGSTVVCPSQGCPPPYEYTVECICAAPLIVHYRLKSPGFSDFRAYVKEFENFLTDGLSVHTNQLFIERFTWEEGRLRMNLKLFPEYVDNTSSREFNTSEVTRIRDMFREWDIHDSDFFGPYELLDFILLDLYNEALTPSSSSGISKGALAGIILGAIACAVTLSAIVSILILRIRLRDYRALSKRRNASRISLKVEGVRSFDYKEMALATKNFSESAQIGEGGYGKVYKGRLSDGTVVAIKRAQEGSLQGEREFLTEIELLSRLHHRNLVSLIGYCDEEGEQMLVYEYMPNGTLRDHLSAYSKDVLSFSMRLKIALGSAKGLLYLHTEANPPIFHRDVKASNILLDSRYTAKVADFGLSRLAPVPDIEGNVPAHVSTVVKGTPGYLDPEYFLTRNLTDKSDVYSLGVVFLELLTGRPPIFHGENIIRQVNMAYQSGGISLVVDKRIESYPSEYAVRFLTLALKCCKDLPDERPKMAEVARELEYICSMLLEPDSKGALYVTSDSSSAIFSSQPSSSTMETPFISGDVSGSDLVSGSVPTIKPR 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00482 994 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 740 948 - -
Phco3g00482 994 MobiDBLite consensus disorder prediction 960 986 - -
Phco3g00482 994 CDD STKc_IRAK 670 934 - -
Phco3g00482 994 Gene3D Phosphorylase Kinase; domain 1 634 739 - -
Phco3g00482 994 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Phco3g00482 994 SMART serkin_6 664 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00482 994 Gene3D Ribonuclease Inhibitor 81 236 IPR032675 -
Phco3g00482 994 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 341 467 - -
Phco3g00482 994 Gene3D Ribonuclease Inhibitor 343 432 IPR032675 -
Phco3g00482 994 ProSiteProfiles Protein kinase domain profile. 664 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00482 994 Pfam Protein kinase domain 665 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00482 994 ProSitePatterns Protein kinases ATP-binding region signature. 670 692 IPR017441 GO:0005524
Phco3g00482 994 SUPERFAMILY L domain-like 96 439 - -
Phco3g00482 994 SUPERFAMILY Protein kinase-like (PK-like) 649 959 IPR011009 -
Phco3g00482 994 Gene3D Ribonuclease Inhibitor 237 342 IPR032675 -
Phco3g00482 994 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 81 242 - -
Phco3g00482 994 PANTHER RECEPTOR-LIKE PROTEIN 55 90 938 - -
Phco3g00482 994 Gene3D Transferase(Phosphotransferase) domain 1 740 946 - -
Phco3g00482 994 Pfam Leucine rich repeat N-terminal domain 81 120 IPR013210 -
Phco3g00482 994 MobiDBLite consensus disorder prediction 960 994 - -
Phco3g00482 994 Pfam Leucine rich repeat 345 395 IPR001611 GO:0005515
Phco3g00482 994 FunFam Leucine-rich repeat protein kinase family protein 628 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00482 Phco-Chr3 3620957 3631042 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Phco3g00482 Pkinase 3.5e-47 CL0016