Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00479 ATGAAGTTCTACTTCCCTCGAGTGCATCCTTTCCTTTTCATAATTGTTATTCTCTGTCCTATGGTTTTTGCTGACTTAAGTTCTGACAAGCAAGCCCTTATTGATTTTGCTGCCGCTGTTCCCCATCGCCGTGACCTTAAGTGGAATCCAGCTACTTCAATCTGTACATCGTGGGTAGGAGTCACATGCAATCCGAATGGCACCCGTGTTGTTTCTGTCCGGCTTCCTGGAATTGGACTAGTCGGCACCATTCCGGCCAATACACTTGGCAAGATTGACTCACTCAAAAATATCAGCCTCCGTGCCAACCTACTCAGTGGAAGTCTTCCTCCTGATATTTCTTCTCTTCCTTCCCTAGAATATCTTTACCTCCAGCATAATAACCTTTCTGGTAACATACCTACCTCATTGTCCACCCACCTCAATGTACTTGATTTGTCATACAATTCCTTCACCGGTGCTATTCCAAAGACATTACAAAACTTAACACAACTAACCAGGTTGAACCTCCAGAACAACTCCCTATCTGGTGAGATACCAAATCTCAATGTCACTAAGCTCAGGCACTTGAATTTAAGCTACAACCATTTGAATGGCTCTATCCCTGCTGCTCTTCAAACTTTCCCCAATTCTTCCTTTGAGGGAAACTCTCTATGTGGATTACCTCTAAAGTCATGCTCTTTAGTCCCCCCTGCACCTTCTCCATTAAGTCCTTCCCCACCAAGTCCTTCAAGACGTAGCTCCAAAAGTAAATTGAGTAAGGCTGCTATCATTGCAATTGCAGTTGGTGGGGGTGTGCTATTACTTTTGGTAGCTCTCATCATTTTTCTGTGCTGTTTAAAGAAAAAGAATGACGGAAGCCCCAGAGCTACTAAAGGCAAGGGTCCTAGTGGTGGGAGAAGTGAGAAGCCAAAAGAAGAGTTTGGAAGTGGGGTGCAAGAACCTGAGAAAAACAAGTTGGTTTTCTTTGAGGGCAGTTCTTATAATTTTGATCTAGAGGATTTGCTGAGAGCTTCGGCTGAAGTTCTTGGAAAGGGTAGTTATGGTACTGCATATAAGGCTATATTGGAAGAGTCGACAACAGTTGTAGTGAAAAGGTTGAAGGAAGTTGTTGTAGGCAAAAGGGAATTTGAACAGCAGATGGAGATTGTGAGGAGAGTTGGACAGCACCCTAATGTTGTGCCACTTCGTGCTTACTATTATTCCAAGGATGAGAAGCTTTTGGTTTATGACTACATCCCAAATGGCAATCTATCAACCCTCTTGCATGGTAACAGGGCAAGTGGAAGAACTCCATTAGATTGGAACTCCCGAATAAAAATCTCTGTTGGAATTGCCAGAGGAATTGCTCACATACATTCAGTTGGTGGTCCAAAATTCACTCACGGAAATGTGAAATCCTCGAATGTCCTCCTGAACCAGGATAACGATGGCTGCATCTCTGACTTCGGCCTGACCCCACTTATGAATGTTCCTGCAACACCTTCTAGAGCTGCAGGCTATCGTGCCCCTGAGGTGATTGAAACTCGTAAGCACTCTCACAAGTCAGATGTGTACAGTTTTGGTGTTCTCCTTCTGGAAATGCTGACCGGAAAAGCGCCGCAACAGTCTCCCGGACGCGATGATATGGTTGATCTCCCAAGGTGGGTGCAGTCTGTTGTTAGGGAGGAGTGGACAGCTGAGGTTTTTGATGTGGAGCTAATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGCCATGGCCTGTGTGGCAAAGGTTCCAGATATGAGGCCTACCATGGAGGAAGTAGCGAGAATGATTGAAGAGATCCGGCTATCCGACTCCGAAAACCGGCCATCTTCAGAAGAGAATAGATCCAAGGAGGAATCAACTGCTCAGACTCCATAG 1902 0.4495 MKFYFPRVHPFLFIIVILCPMVFADLSSDKQALIDFAAAVPHRRDLKWNPATSICTSWVGVTCNPNGTRVVSVRLPGIGLVGTIPANTLGKIDSLKNISLRANLLSGSLPPDISSLPSLEYLYLQHNNLSGNIPTSLSTHLNVLDLSYNSFTGAIPKTLQNLTQLTRLNLQNNSLSGEIPNLNVTKLRHLNLSYNHLNGSIPAALQTFPNSSFEGNSLCGLPLKSCSLVPPAPSPLSPSPPSPSRRSSKSKLSKAAIIAIAVGGGVLLLLVALIIFLCCLKKKNDGSPRATKGKGPSGGRSEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESTTVVVKRLKEVVVGKREFEQQMEIVRRVGQHPNVVPLRAYYYSKDEKLLVYDYIPNGNLSTLLHGNRASGRTPLDWNSRIKISVGIARGIAHIHSVGGPKFTHGNVKSSNVLLNQDNDGCISDFGLTPLMNVPATPSRAAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPQQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKVPDMRPTMEEVARMIEEIRLSDSENRPSSEENRSKEESTAQTP 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00479 633 SUPERFAMILY Protein kinase-like (PK-like) 341 615 IPR011009 -
Phco3g00479 633 MobiDBLite consensus disorder prediction 607 633 - -
Phco3g00479 633 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515
Phco3g00479 633 Pfam Leucine Rich Repeat 141 162 IPR001611 GO:0005515
Phco3g00479 633 FunFam Leucine-rich repeat receptor-like protein kinase 28 138 - -
Phco3g00479 633 FunFam Leucine-rich repeat receptor-like protein kinase 139 226 - -
Phco3g00479 633 ProSiteProfiles Protein kinase domain profile. 337 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00479 633 PANTHER OS05G0588300 PROTEIN 12 620 - -
Phco3g00479 633 ProSitePatterns Protein kinases ATP-binding region signature. 343 374 IPR017441 GO:0005524
Phco3g00479 633 Gene3D Ribonuclease Inhibitor 183 227 IPR032675 -
Phco3g00479 633 Gene3D Phosphorylase Kinase; domain 1 305 412 - -
Phco3g00479 633 CDD STKc_IRAK 343 608 - -
Phco3g00479 633 MobiDBLite consensus disorder prediction 286 313 - -
Phco3g00479 633 Pfam Protein kinase domain 340 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00479 633 Gene3D Transferase(Phosphotransferase) domain 1 413 631 - -
Phco3g00479 633 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515
Phco3g00479 633 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Phco3g00479 633 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 413 620 - -
Phco3g00479 633 Gene3D Ribonuclease Inhibitor 26 182 IPR032675 -
Phco3g00479 633 FunFam pollen receptor-like kinase 1 305 412 - -
Phco3g00479 633 MobiDBLite consensus disorder prediction 296 313 - -
Phco3g00479 633 MobiDBLite consensus disorder prediction 607 627 - -
Phco3g00479 633 SUPERFAMILY L domain-like 40 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00479 Phco-Chr3 3579474 3582445 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco3g00479 Pkinase 7.8e-39 CL0016