Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00469 ATGGAGGTCGAGGTTTGCATGAACGGTGCGTGCAAGAATGGCTACGCGAGAGAGTGGAAGAAAGGATGGCCTCTGAGATCGGGTGGATTCGCCAGGCTCTGCGATAAGTGCGGATCTGCATATGCCAATTCAATTTTCTGTGAAAAATTCCACCTGCATCAAACTGGTTGGAGAGAGTGCGACTTTTGCAACAAGTCTATCCACTGTGGATGCATAATATCAAGGTTTTCTTTTGAGTACCTTGATTTTGGAGGTATACGTTGCTCAACCTGTCTGAAAGCTTCTCAACTTCCTCTGATACAGGAGACTGGGAACTCTATCAGACCTATTAGATCAGTAAAAAATCATGCAAGTGATCGTCATACTGAACATATTGATGATAGACTATTCCTTGATGGTTGTAGCAAAAGAAAACTTATGCACATGCGAAGCATTGTTGATGGTAGAGAATCCAGCCGGTGGACTCAAGCTAAGAGAGATGACAGAGATTCATGTATTGATCTAAACAGGGAAGACATGAGATTTTCAAATGTGATGAAATCGAGTAATCATTCATTAAAATTTACTACATTAGAAAATAATAGACCAACATGGGATAGTAGAAGTATGCACAGATCAAGTTCATTGAATATTTCTCTGGGAGCCTCATCAGGAAATTCTGCGCTACCTTCTGCTTTAGAGATTGTAGAAGGGAGATTTGAGGGTAAAACATCATTTTCTTCCTTTCATCAAGGGCAAAGATCTCTCTCCATTATGCCTAAACCATTGATGAATGCAATAACCATAAATATGGAAACAAGCAATGGCATGATCTCTCAAGAACGTGTTGCACGGCCACCTACTGATGGGAAAGGCAAGAATATGTTACTTTCTCGATACTGGCCTCGGATTACTGATCAAGAGCTTCAGCAATTGTCCGGAGATTTGAAGTCTACTATAGTGCCTTTATTTGAGAAGGTACTAAGTGCCAGTGATGCAGGTCGAATTGGTCGTCTCGTTCTCCCAAAATCTTGCGCTGAGGCTTACTTTCCTCCTATTTCACAATCAGAAGGTCTTCCTTTGCATATGAAAGATGTGAAGGGAAATGAGTGGACATTTCAGTTTAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTAGAGGGAGTAACCCCTTGCATACAGGCCTTGCAATTAAATGCTGGCGACATTGTGATATTTAGTCGGATAGATCCTGGAGGCAAATTTGTTTTGGGTTTTAGAAGGGCATCGGATTCTATAGATTCTCAGGATGGTTTCGCTGCACATTCCAATGTTTTTTCAACAAAGGAAACAACCTTTTCTGGTGCAAGTGCAAATATGCACCCAGGAAATAGTTATCATGATCTACTCCAGACAAGGAAAGGGAATGGTGATCCGTACTTAAATAGATGTTCAGAGCATTTCCGTTTGGGTACTGGAATTGCTGATTGTCTTCGAACTGAAAATTTTGAGATGGTAAACAACGATTTGGTGCAACTTCCAATTTCAGTTTCAGAGAAGACTCAAAATATTGGGCCTATGTGTAAGAGGTTGCTCGTACATAATGAAGATGCCATGGAGTTGAGAGTTACATGGGAAGAAGCTCAGGGATTGCTTTGTCCGGCACCCAGAGTCAAGTCCAGTATTGTAACAATTGAGGACCAAGAATTTGAGGAATATGAGGAACCCCCAGTCTTTGGAAAGAAAACTACAATAAATGCTCGTTCATCTGGGTCTTTGAGCTTAGCAACTGAGGAAACGAGTCCACAGGAATTAGATAATGTTCTGGTAACCAGTAAAGATTCAAAAAAGCGAAGAATTATGGAAAAAGCCAAGTCAATTATAGAACATGAGGCTTTCGGCTTGAATGAAGAACCGAGTGCAGGAGTTTTGGATGATGATCTTGCTGAGCCTGGTGATACGTCAGGTGGAGCCACCACGAAACATCCAAGGCACCGTTCTGGATGCATTTGCATTATGTGCATTCGACCTCCAAGTGGAAAAGGGAGACATAGAGCAACATGCACTTGCCCTGCATGCATCACTGTGAAACGCCGTTTGGACAGCCTTATGACGCGTAAGCAGCAACGGCAATCAGAAGGTGAAGCAGATGGTAGCCAGAAAGATTATATTTATGAGGGGGATGAGGGAGATGGTGGAAGTCTCTCGGGTTGTCTTAAGGAGGGTGAACTCAGTGCAGGACAAATAGACCTGAATTGTCGTCCCAATCTTGATGAAGACATGCAAGTGGATATATGA 2262 0.4213 MEVEVCMNGACKNGYAREWKKGWPLRSGGFARLCDKCGSAYANSIFCEKFHLHQTGWRECDFCNKSIHCGCIISRFSFEYLDFGGIRCSTCLKASQLPLIQETGNSIRPIRSVKNHASDRHTEHIDDRLFLDGCSKRKLMHMRSIVDGRESSRWTQAKRDDRDSCIDLNREDMRFSNVMKSSNHSLKFTTLENNRPTWDSRSMHRSSSLNISLGASSGNSALPSALEIVEGRFEGKTSFSSFHQGQRSLSIMPKPLMNAITINMETSNGMISQERVARPPTDGKGKNMLLSRYWPRITDQELQQLSGDLKSTIVPLFEKVLSASDAGRIGRLVLPKSCAEAYFPPISQSEGLPLHMKDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQALQLNAGDIVIFSRIDPGGKFVLGFRRASDSIDSQDGFAAHSNVFSTKETTFSGASANMHPGNSYHDLLQTRKGNGDPYLNRCSEHFRLGTGIADCLRTENFEMVNNDLVQLPISVSEKTQNIGPMCKRLLVHNEDAMELRVTWEEAQGLLCPAPRVKSSIVTIEDQEFEEYEEPPVFGKKTTINARSSGSLSLATEETSPQELDNVLVTSKDSKKRRIMEKAKSIIEHEAFGLNEEPSAGVLDDDLAEPGDTSGGATTKHPRHRSGCICIMCIRPPSGKGRHRATCTCPACITVKRRLDSLMTRKQQRQSEGEADGSQKDYIYEGDEGDGGSLSGCLKEGELSAGQIDLNCRPNLDEDMQVDI 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00469 753 MobiDBLite consensus disorder prediction 692 725 - -
Phco3g00469 753 MobiDBLite consensus disorder prediction 626 652 - -
Phco3g00469 753 SMART B3_2 317 418 IPR003340 GO:0003677
Phco3g00469 753 MobiDBLite consensus disorder prediction 692 716 - -
Phco3g00469 753 SUPERFAMILY DNA-binding pseudobarrel domain 314 416 IPR015300 -
Phco3g00469 753 ProSiteProfiles B3 DNA-binding domain profile. 317 418 IPR003340 GO:0003677
Phco3g00469 753 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 750 - -
Phco3g00469 753 Gene3D - 295 422 IPR015300 -
Phco3g00469 753 CDD B3_DNA 315 416 IPR003340 GO:0003677
Phco3g00469 753 Pfam B3 DNA binding domain 317 417 IPR003340 GO:0003677
Phco3g00469 753 FunFam B3 domain-containing transcription repressor VAL1 295 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00469 Phco-Chr3 3477751 3484508 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco3g00469 B3 4.3e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00469 3 3477751 3484508 Phco3g00469 3 3477751 3484508 ECH
Phco11g01605 11 12325207 12332559 Phco3g00469 3 3477751 3484508 PCT