Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00466 ATGTTAGAAGTGGAGAGAAAGAAGGAGGAGAGTTCAATTGTCTTGGGTCACAAAACGATTAGCTTTTGGGAACAGATGCAAGATCCATCTTCAAACCCTAATTCCAATCCCAATCCCAATCCCAATCCTCACAATGCCAATGCAGCATCCCAGCTACCGCGACCATCGCCGTCCACGGCGGCCACCACCGCTGGCGCCTCCTCATCCTCGATTTTCGCACGCTCAGGTGGGCCCCACCACCGGCGAGCACACTCGGAGGTGAGTTTCCGGCTTCCGGACGACATGATGGACCTTTCGCCGTCGGATCCGTTTGCCGGCGGGTCGTCGACGGCGAGCATGGAGGAGATCGGATCCGAGGATGACCTGTTCTCAACGTACATTGACGTGGACAAGCTGGGAGGTGCAAACGGGTCGGGCGCTGCGGGAAACGGAGCGGATCCGACCGGAGAACGGGAGAAGAGTCCGGCGAGGGCGCGGCACCGGCACAGTAGTTCTGTCGATGACTCTTCGTTCGGCGAAATTATGGAAGCGAAGAAGGCTATGCCTCCTGATAAGCTAGCTGAGCTATGGACAGTTGATCCCAAGCGTGCTAAGAGAATACTTGCAAATCGGCAATCTGCTGCTCGATCTAAAGAGAGAAAAGCTCGCTATATACAAGAACTCGAGCGTAAGGTTCAAACACTTCAGACGGAAGCCACAACTCTTTCTGCCCAATTGACATTATACCAGAGGGACACAACAGGCCTGAGTACTGAAAATACAGAACTTAAGCTTCGTCTGCAAGCGATGGAGCAGCAGGCACAGCTTCGTGATGCTCTTAATGAAGCATTGAAAAAGGAAGTTGAGAGACTTAAACTTGCTACTGGTGAGATGATGAGCCACACTGAATCCTTTAATTTGGGAATGCACCATATTCCGTTTACAGGATCAACTTTCAGTCCAATCCTGTCACAATCAGGTCCTTCTGGTCACCAGAACATTCACTTATCATTTGGTCACTCCCCGTCCGCAATGCCAACTCATCAACTGCATCAAACAAGTTCTCATCCACTATCAGAAATATTGCAAAATGACCAGCTCGGTCGTTTCCAGGGGCTTGACATTAGTAGCAAAGGATCGACTGTGGTGAAGTCCGAAGGCCCCTCACTTTCTGCAAGTGAGAGTAGCACTACATTTTGA 1179 0.5098 MLEVERKKEESSIVLGHKTISFWEQMQDPSSNPNSNPNPNPNPHNANAASQLPRPSPSTAATTAGASSSSIFARSGGPHHRRAHSEVSFRLPDDMMDLSPSDPFAGGSSTASMEEIGSEDDLFSTYIDVDKLGGANGSGAAGNGADPTGEREKSPARARHRHSSSVDDSSFGEIMEAKKAMPPDKLAELWTVDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKLATGEMMSHTESFNLGMHHIPFTGSTFSPILSQSGPSGHQNIHLSFGHSPSAMPTHQLHQTSSHPLSEILQNDQLGRFQGLDISSKGSTVVKSEGPSLSASESSTTF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00466 392 SUPERFAMILY Leucine zipper domain 195 246 IPR046347 GO:0003700|GO:0006355
Phco3g00466 392 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 193 256 IPR004827 GO:0003700|GO:0006355
Phco3g00466 392 Pfam bZIP transcription factor 195 250 IPR004827 GO:0003700|GO:0006355
Phco3g00466 392 MobiDBLite consensus disorder prediction 317 349 - -
Phco3g00466 392 MobiDBLite consensus disorder prediction 150 172 - -
Phco3g00466 392 MobiDBLite consensus disorder prediction 41 74 - -
Phco3g00466 392 CDD bZIP_plant_RF2 196 245 IPR044759 GO:0003700|GO:0006355
Phco3g00466 392 Coils Coil 211 238 - -
Phco3g00466 392 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 28 361 - -
Phco3g00466 392 SMART brlzneu 191 255 IPR004827 GO:0003700|GO:0006355
Phco3g00466 392 Gene3D - 194 246 - -
Phco3g00466 392 MobiDBLite consensus disorder prediction 372 392 - -
Phco3g00466 392 FunFam probable transcription factor PosF21 194 247 - -
Phco3g00466 392 Coils Coil 259 290 - -
Phco3g00466 392 MobiDBLite consensus disorder prediction 137 172 - -
Phco3g00466 392 MobiDBLite consensus disorder prediction 1 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00466 Phco-Chr3 3468488 3470953 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco3g00466 bZIP_1 6.8e-09 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00466 3 3468488 3470953 Phco3g00466 3 3468488 3470953 ECH
Phco11g01612 11 12408193 12410984 Phco3g00466 3 3468488 3470953 PCT