Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00464 ATGCAAATTAACTACACATTCCCCTGTTCAACCAAGGAACTTCCAATGGCACTCCATGCATCCTCTTTTGTCCTACTTATTCTCATTTTTATCCATGTTGACATGCACTTGAAGACTACCTTTGCTGACTATGGCGGTTGGCAGGGTGGTCATGCTACTTTCTATGGCGGTGGTGATGCTTCTGGCACAATGGGAGGTGCATGTGGCTATGGGAATTTGTACAGTCAGGGATATGGAACTAACACTGCAGCTCTAAGCACTGCTTTGTTCAACAATGGCTTGAGTTGTGGGGCATGTTTTGAAATGAAGTGTGATGATGACCCAAGATGGTGCAAGCCTGGCACCATTGTTGTCACTGCTACAAACTTTTGTCCTCCCAACTTTGCTTTGCCAAACAATAATGGTGGTTGGTGCAACCCTCCTCTACAACACTTTGATATGGCAGAACCAGCCTTCCTTCAAATTGCTCAATATAGAGCTGGAATTGTGCCTGTGGCATTTAGAAGGGTGTCTTGTGTGAAAAAGGGGGGAATAAGGTTCACAATTAATGGACATTCTTACTTCAACCTGGTTTTGATCACCAACGTCGCGGGTGCAGGAGATGTCCATGCAGTCTCCATCAAAGGGTCCAGAACTAGCTGGCAACCTATGTCAAGAAACTGGGGACAAAACTGGCAGAGCAACTCCTACCTCAATGGACAAAGCCTCTCTTTTCAACTCACCGCCAGTGACGGTAGAACTCTGACAGCCTTCAACGTGGCACCAGATAACTGGCAGTTTGGTCAGACCTTCCAAGGGGGTCAGTTTTAG 810 0.4654 MQINYTFPCSTKELPMALHASSFVLLILIFIHVDMHLKTTFADYGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEMKCDDDPRWCKPGTIVVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVAFRRVSCVKKGGIRFTINGHSYFNLVLITNVAGAGDVHAVSIKGSRTSWQPMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTLTAFNVAPDNWQFGQTFQGGQF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00464 269 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Phco3g00464 269 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Phco3g00464 269 PRINTS Expansin/Lol pI family signature 214 228 IPR007118 GO:0005576
Phco3g00464 269 PRINTS Expansin/Lol pI family signature 252 266 IPR007118 GO:0005576
Phco3g00464 269 PRINTS Expansin/Lol pI family signature 160 176 IPR007118 GO:0005576
Phco3g00464 269 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576
Phco3g00464 269 SMART dpbb_1 82 167 IPR007112 -
Phco3g00464 269 FunFam Expansin 177 269 - -
Phco3g00464 269 Gene3D - 176 269 IPR036749 -
Phco3g00464 269 Pfam Lytic transglycolase 82 166 IPR009009 -
Phco3g00464 269 SUPERFAMILY Barwin-like endoglucanases 26 195 IPR036908 -
Phco3g00464 269 CDD DPBB_EXPA_N 46 172 - -
Phco3g00464 269 SUPERFAMILY PHL pollen allergen 174 266 IPR036749 -
Phco3g00464 269 PRINTS Expansin signature 188 209 IPR002963 GO:0009664
Phco3g00464 269 PRINTS Expansin signature 152 165 IPR002963 GO:0009664
Phco3g00464 269 PRINTS Expansin signature 176 188 IPR002963 GO:0009664
Phco3g00464 269 PRINTS Expansin signature 223 244 IPR002963 GO:0009664
Phco3g00464 269 PRINTS Expansin signature 104 115 IPR002963 GO:0009664
Phco3g00464 269 PRINTS Expansin signature 252 268 IPR002963 GO:0009664
Phco3g00464 269 PRINTS Expansin signature 77 91 IPR002963 GO:0009664
Phco3g00464 269 PRINTS Expansin signature 116 126 IPR002963 GO:0009664
Phco3g00464 269 PRINTS Expansin signature 135 152 IPR002963 GO:0009664
Phco3g00464 269 Pfam Expansin C-terminal domain 178 255 IPR007117 -
Phco3g00464 269 Gene3D - 31 172 IPR036908 -
Phco3g00464 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 187 266 IPR007117 -
Phco3g00464 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 177 IPR007112 -
Phco3g00464 269 FunFam Expansin 35 173 - -
Phco3g00464 269 PANTHER EXPANSIN-A15 24 269 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00464 Phco-Chr3 3458664 3460752 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00464 3 3458664 3460752 Phco3g00464 3 3458664 3460752 ECH
Phco3g00464 3 3458664 3460752 Phco6g00832 6 8200928 8203694 ECH
Phco11g01627 11 12513955 12516021 Phco3g00464 3 3458664 3460752 ECH
Phco11g01627 11 12513955 12516021 Phco3g00464 3 3458664 3460752 PCT