Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00460 ATGGGGAACAACAGGTTTAAGTTGTCCGATATGATGCCAAATGCTTGGTTTTACAAGCTCAAAGATATGAGCAGATCAAGAAAGAGAAATGGTTCTCATGTTATGAAGAGTAAAGTATCTTCACCAACATCTCAAAGGTCGCTGCCAAGATATTCACACTATGAGCCAATCAGAGCTGGTAAGCTATACAACACTCCCATTCACACGAGAGACTTGGACATGCCATTCACTGATTCACCTAGAAGGTCAGCCAAGAGAAGGACAAGGAGAAAAACCATTTACAAGCCTTCTCCCACTGTTGTTTCTTCGTCTTTCATACCAACTTCCAACTACGACTCCACCAATCATTGGATCAAACCATACCAAGTTCAGTCACCAGATTATGATGTGTCGTCAGTTGAAAGCTCTTCTGAATCTGATCTCCATGAATATGCGTATTCTGAGTCTGAATGTGACAGTTTTTCTGTTCCTGATTTACTTAATGGAATGGCCTCTAATGGCAGCTGCAGAGTTAGCTCTTCCACCAATGACATCATCATTGACATGAACAACGAGTCCTTCCTTGGGAACTCTGAAAACCAAGATGGGTTTGATGCAATTTCACAGCTAGGTCTTGCTCCAATATTGACGAAGCCAGTGAAGTTTGACGACAAGGTCATTGAAGCCACTGAGTTGAGAAGCTCAACTGAATGGGATGAGCTGCAGGATAATCAGTCTTTCTCAATTGAAATTAACAAAGAGGAAGGCAATAGAACTCAAAGGAGGAGAAAAAGCAGTCATAGAACGCCTTTCACTAATTCTTCTGGAATAAGGCTTAGAATCAATTCTCCAAAACTTGCTAGCAGAAAAATTCAAGCCTGTGCAAGAAGGAGTGTGTCATCCGCTGCAAGCAGAGCTTCAAGGGGTACAAGCTTTCCGGATGGTTTTGCTGTTGTGAAGTCCTCATTTGATCCACAGAGTGACTTCAGGGAGTCAATGGTGGAGATGATTGTGGAGAACAACATCCAAGCATCGAAAGATTTGGAGGACCTACTTGCCTGCTACCTTTCCCTCAATTCAAGTGAATACCATGATCTCATTGTTAAAGCATTTGAGCAAATTTGGTTTGATTTGGCTCAACTTAGAATGTAA 1131 0.4191 MGNNRFKLSDMMPNAWFYKLKDMSRSRKRNGSHVMKSKVSSPTSQRSLPRYSHYEPIRAGKLYNTPIHTRDLDMPFTDSPRRSAKRRTRRKTIYKPSPTVVSSSFIPTSNYDSTNHWIKPYQVQSPDYDVSSVESSSESDLHEYAYSESECDSFSVPDLLNGMASNGSCRVSSSTNDIIIDMNNESFLGNSENQDGFDAISQLGLAPILTKPVKFDDKVIEATELRSSTEWDELQDNQSFSIEINKEEGNRTQRRRKSSHRTPFTNSSGIRLRINSPKLASRKIQACARRSVSSAASRASRGTSFPDGFAVVKSSFDPQSDFRESMVEMIVENNIQASKDLEDLLACYLSLNSSEYHDLIVKAFEQIWFDLAQLRM 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00460 376 MobiDBLite consensus disorder prediction 35 49 - -
Phco3g00460 376 ProSiteProfiles OVATE domain profile. 311 370 IPR006458 -
Phco3g00460 376 MobiDBLite consensus disorder prediction 71 90 - -
Phco3g00460 376 Pfam Transcriptional repressor, ovate 315 371 IPR006458 -
Phco3g00460 376 MobiDBLite consensus disorder prediction 240 269 - -
Phco3g00460 376 Pfam DNA-binding domain 1 41 IPR025830 GO:0003677
Phco3g00460 376 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 136 372 IPR038933 GO:0045892
Phco3g00460 376 NCBIfam uncharacterized plant-specific domain TIGR01568 309 372 IPR006458 -
Phco3g00460 376 MobiDBLite consensus disorder prediction 27 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00460 Phco-Chr3 3411808 3412938 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Phco3g00460 Ovate 4.9e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01630 11 12537096 12538761 Phco3g00460 3 3411808 3412938 PCT