Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00454 ATGTCCCAATCATCACCGCCCACGTCAGAAAAGGGAATCAATCCCAAACGCCTTAAGCAACAATTTGGGGAAATTTCCCAGATCCCGTTTAAACCATTCTACGTTCATCCCCCAATTTCTCAAGACCAGAAACGATCGTGCTCTAGCACGATCGCCACAGTGAAACCAATGCCGGAAATTGAACAGGCGGCGGCGGAGAGCACCGTCCTGTTCGGAAAATACGACGTGGGAAGGCTCCTAGGATGCGGCGCGTTCGCAAAGGTGTACCACGCGCGTAACACCGAAACGGGGCAGAGTGTGGCAGTGAAAGTCGTAAGCAAGAAGAAACTAGCCGCAACGGGGATGGCCTCCAACGTGAAGCGCGAGATTGCCATTATGAGCCGTCTTCACCACCCCAACATCGTGAAACTCCACGAAGTGTTGGCGACCAAGACAAAAATCTACTTCATCTTGGAATTCGCGAAAGGCGGCGAGCTCTTCGCGAGAATCGCGAAAAATCGATTCAGCGAAGATCTTGCGCGACGGTTCTTCCAGCAGTTGATCTCCGCTGTCGGGTACTGCCACGCGCGCGGCGTGTTCCACCGCGACTTGAAGCCGGAGAACCTACTGCTGGACGAGCAGGGGAACCTTAAAGTCTCCGACTTTGGACTCGGCGCGGTGAAGGAGCAGATAGGGCTGGATGGGAGGCTGCAGACGCTATGTGGAACCCCTGCTTACGTGGCACCGGAGATTTTGGCGAAGAAGGGTTACTACGGGGCTAATGTTGATGTTTGGTCTTGTGGGGTAATTCTCTTTGTTCTTGTGGCTGGGTATCTACCATTCAATGACCCAAATCTTATGGTTATGTATAGAAAGATTTACAAGGGGGAGTTTCGGTGTCCAAGGTGGTTTTCGATGGAGTTGAGGAGGTTTCTGGCGAGGTTGTTGGATACGAATCCCGAGACGAGGATAACCATAGATGAGATTTTGAAGGAGGCGTGGTTCAAAAAGGGGTACAAGGAGGTTACTTTTGGCGATTTAGGGTTGGAGTGGAAGAGTGAAGGTGGTGGGGTGAAGGATTTGAATGCGTTCGATATCATTTCTTTCTCCTCAGGCTTGAATCTCTCCGGTTTGTTTGATTCGTTGAATGGGGTGGAAGAGGGAGAGAGGTTTATGCTGAAGGAGTCGCCGGAGAAGGTGGTGGAGAAGGTATTGGCGGCGGCGGCTACTGTCGAGGGTATTGTCGTACGGACAAGAAAGGAGTGTGGGGTGGAGTTGGAGGGGTGTAATGGTGATTTCGCCGCTTTGGTGGAGGTTTACCGGTTATCGGCGGAACTGGTTGTGGTTGAGGTGAGAAGGAGGGATGGGAATGGCGGAGTTTTTAGGGATGTGTGGAGGAATAAGCTCAGGCCATATCTCTGTGCTGCTAGTAGCAGTGCGACGTCGGATCGGGAGGAAACTGGTGCGCAGCCGGTTGCCAGTGAATTATGA 1470 0.5224 MSQSSPPTSEKGINPKRLKQQFGEISQIPFKPFYVHPPISQDQKRSCSSTIATVKPMPEIEQAAAESTVLFGKYDVGRLLGCGAFAKVYHARNTETGQSVAVKVVSKKKLAATGMASNVKREIAIMSRLHHPNIVKLHEVLATKTKIYFILEFAKGGELFARIAKNRFSEDLARRFFQQLISAVGYCHARGVFHRDLKPENLLLDEQGNLKVSDFGLGAVKEQIGLDGRLQTLCGTPAYVAPEILAKKGYYGANVDVWSCGVILFVLVAGYLPFNDPNLMVMYRKIYKGEFRCPRWFSMELRRFLARLLDTNPETRITIDEILKEAWFKKGYKEVTFGDLGLEWKSEGGGVKDLNAFDIISFSSGLNLSGLFDSLNGVEEGERFMLKESPEKVVEKVLAAAATVEGIVVRTRKECGVELEGCNGDFAALVEVYRLSAELVVVEVRRRDGNGGVFRDVWRNKLRPYLCAASSSATSDREETGAQPVASEL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00454 489 FunFam Non-specific serine/threonine protein kinase 64 356 - -
Phco3g00454 489 ProSiteProfiles NAF domain profile. 349 373 IPR018451 GO:0007165
Phco3g00454 489 CDD CIPK_C 355 467 - -
Phco3g00454 489 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 67 447 - -
Phco3g00454 489 Pfam NAF domain 353 403 IPR004041 GO:0007165
Phco3g00454 489 SUPERFAMILY Protein kinase-like (PK-like) 70 335 IPR011009 -
Phco3g00454 489 FunFam Non-specific serine/threonine protein kinase 65 153 - -
Phco3g00454 489 Pfam Protein kinase domain 74 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00454 489 ProSiteProfiles Protein kinase domain profile. 74 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00454 489 SMART serkin_6 74 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00454 489 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
Phco3g00454 489 Gene3D Transferase(Phosphotransferase) domain 1 64 345 - -
Phco3g00454 489 Gene3D Kinase associated domain 1, KA1 349 469 - -
Phco3g00454 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00454 Phco-Chr3 3359553 3361656 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Phco3g00454 Pkinase 1e-70 CL0016