Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00452 ATGGAGAACAAATCAAGCATCTTGATGCAAAAATATGAACTAGGAAGGTCACTAGGCAAAGGAACGTTTGGAAAAGTTTACTATGGCCGTAGTACAGTAACTAACCAAAGTGTGGCCATTAAAGTGATTGACAAGAATAAGGTTATAAGAACTGGACAGGCTGATCTCATAAAAAGGGAAATATCTGTTATGAGACTAGTCAAGCACCCCAATGTTATTGAGCTTTTTGAGGTCATGGCCACGAAGAGTAAGATTTACTTTGTTATGGAATATGCTAAGGGAGGAGAACTGTTTAAGAAGGTGGCCAAAGGAAAGCTCAAAGAAGATGTTGCACACAAATATTTTCGGCAGCTAGTGAATGCAGTGGATTTTTGTCACAGTAGAGGTGTGTGCCATAGAGACATAAAGCCAGAGAACATTTTGTTGGATGAAAATGATAATTTGAAGATCTCTGATTTCGGGTTAAGTGCCCTGGCTGAATCCAAACACCAAGACGGCTTGTTGCACACAGCTTGTGGAACACCTGCCTATGTCGCTCCTGAGGTCATCAAAAGGAAAGGTTACGATGGTGCCAAAGCTGACATTTGGTCATGTGGGGTAGTTTTGTTTGTCTTACTAGCAGGTTACTTTCCTTTTCAAGATCCTAATTTGATGGTGATGTATAGGAAGATAAGCAAGGCAGAGTTTACATGCCCTAGATGGTTCTCAGGAGGAGTTCGGAGGCTATTGAGCAAGATGTTGGATCCAAATCCAGAAACTAGGATTTCCATGGATAAGATTAAGCAATGTTCTTGGTTTATGAAGTGGCCAAATGGTAGACAGACAACACAAGAAGAGGAAAACAGGAGTATCTCTCCTTCAATTACAAATCATTCTGAACAATGTGGTGATGGAAGTAATGGTTTAGCAGCAGAAGCAAGGCAAGAGTCAGCTGTGCCAGTAAGTATAAATGCCTTCGACATAATCTCCCTTTCACCTGGGTTTAATCTTTGTGGATTCTTTGAAGACAGCTTTCAGAAAAGGGAAGCTAGATTTACTTCAAGACAACCAGCATCTGTCATCATCTTCAGGCTGGAGGAAATGGCCAATGGGCTGAAGATGAAAATAAAGAAAAGGGCTGCCGGTTTGTTGAAAATGGAGGGCCTTCATGAAGGTAGGAAGGGGATCTTATCCATTGATGCAGAGATCTTTGAGGTTACTCCACTTCTGCACTTGGTGGAGGTGAAGAAATCAAATGGAGATACGCTGGAATATGAGAAAATACTAAAAGAAGCCATAAGGCCTGCTCTTAAAGATATTGTTTGGGTATGGCAAGGTGACCAACAACAGTAA 1332 0.4129 MENKSSILMQKYELGRSLGKGTFGKVYYGRSTVTNQSVAIKVIDKNKVIRTGQADLIKREISVMRLVKHPNVIELFEVMATKSKIYFVMEYAKGGELFKKVAKGKLKEDVAHKYFRQLVNAVDFCHSRGVCHRDIKPENILLDENDNLKISDFGLSALAESKHQDGLLHTACGTPAYVAPEVIKRKGYDGAKADIWSCGVVLFVLLAGYFPFQDPNLMVMYRKISKAEFTCPRWFSGGVRRLLSKMLDPNPETRISMDKIKQCSWFMKWPNGRQTTQEEENRSISPSITNHSEQCGDGSNGLAAEARQESAVPVSINAFDIISLSPGFNLCGFFEDSFQKREARFTSRQPASVIIFRLEEMANGLKMKIKKRAAGLLKMEGLHEGRKGILSIDAEIFEVTPLLHLVEVKKSNGDTLEYEKILKEAIRPALKDIVWVWQGDQQQ 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00452 443 SUPERFAMILY Protein kinase-like (PK-like) 8 288 IPR011009 -
Phco3g00452 443 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Phco3g00452 443 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00452 443 CDD STKc_SnRK3 11 265 - -
Phco3g00452 443 FunFam Non-specific serine/threonine protein kinase 5 304 - -
Phco3g00452 443 Gene3D Kinase associated domain 1, KA1 315 436 - -
Phco3g00452 443 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Phco3g00452 443 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00452 443 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00452 443 Gene3D Transferase(Phosphotransferase) domain 1 2 314 - -
Phco3g00452 443 Pfam NAF domain 313 371 IPR004041 GO:0007165
Phco3g00452 443 FunFam Non-specific serine/threonine protein kinase 311 435 - -
Phco3g00452 443 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 431 - -
Phco3g00452 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Phco3g00452 443 CDD CIPK_C 317 431 - -
Phco3g00452 443 MobiDBLite consensus disorder prediction 273 302 - -
Phco3g00452 443 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
Phco3g00452 443 MobiDBLite consensus disorder prediction 273 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00452 Phco-Chr3 3347423 3348754 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Phco3g00452 Pkinase 1.2e-75 CL0016