Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00450 ATGAAACAAAATCTTTCTCCCTCCCAAAACACCACTTGGATCAAGAAAATCAAAAGGCATGTTTGGACATCAAGAGATAGTTTTTGTATTTTTCCCAAAGATAGATTAGATGAGATAACAAAGATCAGAGCAGAGGTAGAAGCATCTTCTCAAATGGGAAGGAAGCATTTCTATGGTCCAGTTCCTGGGATAACCTTAAACACAGTAACCCCTTGTGCTGCATGCAAGCTTCTGAGAAGAAGGTGTGCTGAAGAATGCCCTTTCTCTCCTTATTTTTCACCACATGAGCCTCAAAAGTTTGTAGCCGTTCACAAAGTGTTTGGTGCAAGCAATGTCTCCAAGATGCTTCTGGAGGTTCCAGAGGGCCAAAGAGCTGATGCAGCAAATAGCCTTGTTTACGAAGCTAACCTGAGGCTAAGAGATCCTGTATACGGATGCATGGGTGCAATATCAGCTTTGCAGCAACAAGTTCAATCTTTACAAGCAGAACTAAATGCAATAAGGGAAGAGATACTAAAATACAAATATAGAGAGGCTGCGAGTCTCATTTCTTCTAATCATGCAGCTTTGGTTTCTTCAGCTGATGCAATATCAGCAGCAATTCCCGCAAACTCACAACCACAAGGTCTTTCTCAACTTCCTCCTCCTCCTCTACCAAAACAATTGCCTACTCCTCCACTAAAACCATTGCCTTCTCCTTCTGTTATCCTTTCATCCTTCTCTTCATCTTCAACTTCTTCTGTGTACACTCCTCCTAAAAGCTCAATGAGCCTTGGATCCATTTCCAGCACTGAAAATGTCCCATACTTTGTTTAG 816 0.4179 MKQNLSPSQNTTWIKKIKRHVWTSRDSFCIFPKDRLDEITKIRAEVEASSQMGRKHFYGPVPGITLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFVAVHKVFGASNVSKMLLEVPEGQRADAANSLVYEANLRLRDPVYGCMGAISALQQQVQSLQAELNAIREEILKYKYREAASLISSNHAALVSSADAISAAIPANSQPQGLSQLPPPPLPKQLPTPPLKPLPSPSVILSSFSSSSTSSVYTPPKSSMSLGSISSTENVPYFV 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00450 271 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 67 214 - -
Phco3g00450 271 Pfam Lateral organ boundaries (LOB) domain 71 167 IPR004883 -
Phco3g00450 271 Coils Coil 150 177 - -
Phco3g00450 271 MobiDBLite consensus disorder prediction 209 226 - -
Phco3g00450 271 ProSiteProfiles LOB domain profile. 70 171 IPR004883 -
Phco3g00450 271 MobiDBLite consensus disorder prediction 205 226 - -
Phco3g00450 271 MobiDBLite consensus disorder prediction 242 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00450 Phco-Chr3 3330661 3331802 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phco3g00450 LOB 2.9e-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00450 3 3330661 3331802 Phco3g00450 3 3330661 3331802 ECH