Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00430 ATGGCTTCTTCTACCGGTAGTTTAGACACCTCTGCAACTGCAAACTCCTTCACCAACTTCACCTTCTCCACACACCCCTTCATGACCACTTCTTTCTCTGACCTCCTTCTTTCTCCCACAGATAACAAGTCTCCGGGTGGCTTGTCTGAGAGAAATGCCTCTGGTGTGCCCAAATTCAAGTCCACTCCACCTCCTTCTTTGCCTCTCTCCCCTCCTCCCATTTCTCCTTCTTCTTACTTCGCTATTCCCCCTGGTTTGAGCCCTGCTGAGCTTCTTGACTCTCCGGTTCTCCTTAACGCTTCTAACATACTGCCATCTCCAACAACTGGAGCATTTGTTTCTCAGAGCTTCAATTGGAAGAGCAGTTCAGGGGGAAACCAGCAAATTGTCAAGGAAGAAGACAAAAGCTTCTCAAATTTCTCTTTCCAGCCCCAGCCAAGGCCTCCTGCTTCATCCACAGTAACATATCAATCTTCAAATGTTGCAGTTCAAAACCAGCAACATCCATGGAATTTTCAGGAGACCTCAAAGCAAGATAGTTTTTCTTCAGGGAAGAGTATGATGAAAACTGAAAACTCTTCTTCCATGCATAGTTTTCCCCCTGAGATTGCTAGTGTCCAAACTAACCATAGCAATGGGTTTCAATCTGATTTTGGAAATTATCCCCCTCAATCTCAGACCTTAAGCAGAAAGTCAGATGATGGATACAATTGGAGGAAGTATGGCCAAAAACAAGTGAAAGGGAGTGAAAATCCAAGAAGTTATTACAAATGCACATACCCAAATTGTCCTACAAAGAAGAAGGTTGAGAGGTCTTTAGATGGACAAATTACTGAGATAGTTTATAAGGGTACTCATAACCATCCCAAGCCTCAATCTACAAGGAGAAACTCATCATCTTCCTCTTCTCTTGCAATCCCTCCTTCAAATCCCATCAGCACTGAAATCCAAGATCAATCATATGCCACTCATGGTAGTGGACAAATGGATTCCGCCGCCACCCCAGATAACTCATCAATATCAATAGGAGATGATGATTTTGAGCAGAGTTCTCAAAAGTGTAAATCAGGAGGAGATGAATATGATGAAGATGAACCTGAGGCAAAAAGATGGAAAATTGAAGCAGAAAATGAGGGTATGTCAGCGCCTGGTAGTAGAACAGTGAGAGAACCTAGAGTTGTGGTTCAGACAACCAGTGACATTGATATCCTAGATGATGGGTACAGATGGAGAAAATATGGGCAGAAAGTTGTAAAGGGCAATCCCAATCCAAGGAGTTACTACAAGTGTACACACCCTGGATGTCCAGTGAGGAAGCACGTGGAACGAGCATCACACGACCTACGGGCTGTGATCACAACTTATGAGGGAAAGCACAACCACGATGTCCCTGCAGCCCGTGGCAGTGGTGGTCATTCTGTTAACAGACCCCTGCCAAACAATGCTGCAAACCCCACCACCGCAGCCACTGCCATAAGGCCATTGCCTGTGATCCATCACACTGACAATTCCGTTCAAAGCCAAAGGCCACAAGCACCACCAGAAGGGCAATCACCCTTCACCCTAGAGATGCTACAAAGTTCAGGAAGTTTTGGATTCTCGGGTTTTGGGAATCCAATGGGATCTTACATGAATCAGCAACAATTATCTGACAATGTTTTCTCCTCCAGAACCAAGGAGGAGCCCAGAGATGACGTGTTCCTTGAGTCTCTACTATGCTGA 1722 0.4512 MASSTGSLDTSATANSFTNFTFSTHPFMTTSFSDLLLSPTDNKSPGGLSERNASGVPKFKSTPPPSLPLSPPPISPSSYFAIPPGLSPAELLDSPVLLNASNILPSPTTGAFVSQSFNWKSSSGGNQQIVKEEDKSFSNFSFQPQPRPPASSTVTYQSSNVAVQNQQHPWNFQETSKQDSFSSGKSMMKTENSSSMHSFPPEIASVQTNHSNGFQSDFGNYPPQSQTLSRKSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQSTRRNSSSSSSLAIPPSNPISTEIQDQSYATHGSGQMDSAATPDNSSISIGDDDFEQSSQKCKSGGDEYDEDEPEAKRWKIEAENEGMSAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGGHSVNRPLPNNAANPTTAATAIRPLPVIHHTDNSVQSQRPQAPPEGQSPFTLEMLQSSGSFGFSGFGNPMGSYMNQQQLSDNVFSSRTKEEPRDDVFLESLLC 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00430 573 MobiDBLite consensus disorder prediction 282 367 - -
Phco3g00430 573 SUPERFAMILY WRKY DNA-binding domain 231 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g00430 573 MobiDBLite consensus disorder prediction 172 236 - -
Phco3g00430 573 MobiDBLite consensus disorder prediction 172 232 - -
Phco3g00430 573 Gene3D WRKY domain 220 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g00430 573 MobiDBLite consensus disorder prediction 348 367 - -
Phco3g00430 573 ProSiteProfiles WRKY domain profile. 399 464 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g00430 573 ProSiteProfiles WRKY domain profile. 233 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g00430 573 MobiDBLite consensus disorder prediction 502 521 - -
Phco3g00430 573 Gene3D WRKY domain 391 457 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g00430 573 MobiDBLite consensus disorder prediction 287 347 - -
Phco3g00430 573 MobiDBLite consensus disorder prediction 38 71 - -
Phco3g00430 573 Pfam WRKY DNA -binding domain 233 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g00430 573 Pfam WRKY DNA -binding domain 405 461 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g00430 573 FunFam WRKY transcription factor 223 292 - -
Phco3g00430 573 SUPERFAMILY WRKY DNA-binding domain 396 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g00430 573 SMART WRKY_cls 232 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g00430 573 SMART WRKY_cls 404 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g00430 573 FunFam WRKY transcription factor 33 391 457 - -
Phco3g00430 573 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 92 499 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00430 Phco-Chr3 3148224 3151021 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco3g00430 WRKY 1.6e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01656 11 12723586 12726505 Phco3g00430 3 3148224 3151021 PCT