Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00403 ATGGACGGTATTCACGGGGGTGATTCTCGGATACACATCAGTGATGGACAGCATCCTATACATGTGCCATATGTGCAAGAACATGAGCATCATGGACTGCACCATATGAGCAATGGGAATGGGATTGATGAGGATCAGAATGATGGTGGTGATACTAACTGTGGTGGAAGTGAGAGTGTGGAAGGTGATATCCCTTCCAGTCATGGAAATCTCCCTGACAATCACGCTGTAATAATGCATCAAGGGGGTGATGCTGGGGATCAGCTTACGTTGTCTTTTCAGGGCCAAGTTTATGTCTTTGACTCCGTGTCTCCGGAAAAGGTTCAAGCTGTACTACTGTTACTGGGTGGCCGCGAAATACCTCCAACCATGCCTACCATGCCAGTGTCTCCTCACCATAATAACCGGGGATTTACTGGTACTCCGCAAAAATTCAGTGTCCCTCAGAGATTAGCTTCATTGATTAGGTTTCGTGAAAAGCGGAAAGAACGAAATTTTGACAAAAAAATTCGGTATACTGTTCGGAAAGAAGTAGCATTAAGGATGCAAAGGAATAAAGGTCAGTTTACATCTTCAAAGTCCAATCATGATGAATCTGCATTAGCATTAACAAATTGGGGGCCGAACGAAAACTGGTCAGCAGAGAATAACGGTTCCCAGCAGCAAGATATTGTTTGTAGGCATTGTGGCATCAGTGAGAAGTGCACACCAATGATGCGACGTGGGCCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGTCTTATGTGGGCAAATAAGGGAACCCTGAGGGACCTATCAAGGGCGCCACCCATATCTGGACCAATAAAAAATGAGGTCGGATACCATAATAAAAGTGTAGAGGCCAACCAGATAGTCCTTAGAGTTGCAGGAGAAGCTGATGATTCGTCGTGA 915 0.4568 MDGIHGGDSRIHISDGQHPIHVPYVQEHEHHGLHHMSNGNGIDEDQNDGGDTNCGGSESVEGDIPSSHGNLPDNHAVIMHQGGDAGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPTMPTMPVSPHHNNRGFTGTPQKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDESALALTNWGPNENWSAENNGSQQQDIVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRAPPISGPIKNEVGYHNKSVEANQIVLRVAGEADDSS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00403 304 Gene3D - 216 273 IPR013088 GO:0006355|GO:0008270
Phco3g00403 304 Pfam GATA zinc finger 226 262 IPR000679 GO:0006355|GO:0043565
Phco3g00403 304 MobiDBLite consensus disorder prediction 32 74 - -
Phco3g00403 304 Pfam tify domain 87 116 IPR010399 -
Phco3g00403 304 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 272 - -
Phco3g00403 304 SMART GATA_3 220 273 IPR000679 GO:0006355|GO:0043565
Phco3g00403 304 ProSiteProfiles CCT domain profile. 150 192 IPR010402 GO:0005515
Phco3g00403 304 MobiDBLite consensus disorder prediction 40 64 - -
Phco3g00403 304 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
Phco3g00403 304 ProSiteProfiles GATA-type zinc finger domain profile. 220 279 IPR000679 GO:0006355|GO:0043565
Phco3g00403 304 SMART tify_2 82 117 IPR010399 -
Phco3g00403 304 Pfam CCT motif 150 192 IPR010402 GO:0005515
Phco3g00403 304 CDD ZnF_GATA 225 278 IPR000679 GO:0006355|GO:0043565
Phco3g00403 304 PANTHER GATA TRANSCRIPTION FACTOR 28 26 273 IPR045280 GO:0006355
Phco3g00403 304 ProSitePatterns GATA-type zinc finger domain. 226 253 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00403 Phco-Chr3 2944256 2949346 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco3g00403 CCT 8.7e-15 CL0281