Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00374 ATGGGATGCACTTCACTTCTGAGAAGCCCCAAGAAAGAAGAACAAGAGGTACCAGATGCTTTCACCTCCTTATTACCAAATTCTAACCAATCTTACACCTATGAAGATTTCAATATTTTGGACGAACTGGAAGGGGTATTCAACTCCAAGGAGGAAAAAAAGTTGCTGCAACAAAACTCTTCAAGTGGCGCACTTCATTGGGATTTCATGGAATGGGAGGAATTCGCCCCCTTTGGAGAGGAGGGAGAAGATGAAAACGAAGGGAAAGAGCAGGTGAGAGAGAGCATGAGCCAGTATCCATTTGAGGAGCAGCAGATAAAGAGAGAAAACATGGTTGGGTTTGGGGAAATGGATGATGAGAAGATGCTGTCTTTGAACTTGAACTTGAACTATCAAGAGGTTTTGGATGCATGGTCTAACCGAGGCTCTCTCTGGGCTGATGACTGTTCTCTTTCGTTGGCCACCAATAATAGCTGCTATAATGGAGAAGTGCCAGTGTTGGAAGAAGAAAGAGCAAGAAGAGAAGCAAGTGTTCTTAGATACAAAGAGAAACGTCAGAACAGATTGTTCTCAAAGAAGATAAGATACCAAGTTCGGAAACTAAACGCTGATAAAAGACCAAGAATCAAGGGTCGCTTTGTGAAGAGACACTGA 654 0.4297 MGCTSLLRSPKKEEQEVPDAFTSLLPNSNQSYTYEDFNILDELEGVFNSKEEKKLLQQNSSSGALHWDFMEWEEFAPFGEEGEDENEGKEQVRESMSQYPFEEQQIKRENMVGFGEMDDEKMLSLNLNLNYQEVLDAWSNRGSLWADDCSLSLATNNSCYNGEVPVLEEERARREASVLRYKEKRQNRLFSKKIRYQVRKLNADKRPRIKGRFVKRH 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00374 217 MobiDBLite consensus disorder prediction 1 29 - -
Phco3g00374 217 Pfam CCT motif 174 216 IPR010402 GO:0005515
Phco3g00374 217 ProSiteProfiles CCT domain profile. 174 216 IPR010402 GO:0005515
Phco3g00374 217 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 13 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00374 Phco-Chr3 2722179 2723297 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco3g00374 CCT 2.1e-19 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00374 3 2722179 2723297 Phco3g00374 3 2722179 2723297 ECH