Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00373 ATGGGTGGTAATTCTTCACCTTGTGCTTCCTGCAAGTTCTTGAGACGCCGTTGCTCGCAGGATTGCATCTTTGCTCCTTATTTTCCTTCCAATGATGTCTGCAAGTTTGCCACCGTGCACAAGGTCTTTGGCAGCAGCAATATCATCAAAATGCTAAAGGAAGTTCCAGTTAATCAAAGAGGAGATGCAGTGAAGAGTTTGGTTTATGAGGCAAATGCAAGAGTCAGAAACCCAGTTTATGGTTGTGTTGGAATCATATCTAACCTAGAAATTCAAGTTTCTGAGTTACAAATGCAGCTTGCAGTAGTTCAGGCAGAGATTCTCAGCATAAAAAAGCAGCAAGAATTTACCTTTACCAATGGTATATAA 369 0.4092 MGGNSSPCASCKFLRRRCSQDCIFAPYFPSNDVCKFATVHKVFGSSNIIKMLKEVPVNQRGDAVKSLVYEANARVRNPVYGCVGIISNLEIQVSELQMQLAVVQAEILSIKKQQEFTFTNGI 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00373 122 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Phco3g00373 122 Coils Coil 86 113 - -
Phco3g00373 122 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Phco3g00373 122 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00373 Phco-Chr3 2717314 2717872 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phco3g00373 LOB 2.7e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00373 3 2717314 2717872 Phco3g00373 3 2717314 2717872 ECH
Phco11g01676 11 12914979 12915939 Phco3g00373 3 2717314 2717872 ECH
Phco11g01676 11 12914979 12915939 Phco3g00373 3 2717314 2717872 PCT