Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00363 ATGGTAGCGAGAAAAGGCAAAACCCTAGGTGCTTTCATTCGTTTACTGCACTATATGCTTCCTAGAAAGAGAACGAGCGAAGGAGGAGTGGTAGTTGAAGGAGAGAGTGACGCCGGCACCAACAACAATACTTCGAAGAAAGCTCGGATCACCTGCTTTGCTGCCTGCTCGGGTGCTGCGGAATCGGCGGTGAACGACATCAGCCGGGGATTCAGTAGCGGCGGGGACAACAGCGGCGGCGGGAACTCGATCGAGGGAATGGCGTTGGGGGTCTCGAACCCAGCGGAGATCGACGAGGATCTGCACAGTCGGCAGCTCGCCGTCTATGGCCGGGAGACCATGCGGAAGCTATTCGCGTCCAGCGTCCTCGTTTCTGGGATGCAGGGTCTTGGTGTTGAGATTGCGAAGAATCTCATTCTTGCTGGGGTGAAATCCGTAACCTTGCACGATGAAGGAAATGTGGAGTTATGGGATTTGTCCAGTAATTTTGTGTTTTCAGAAAATGATGTTGGCAAGAACAGGGCAGTGGCTTCTGTTAGTAAGTTGCAGGAACTTAACAATGCCGTAGCTGTACTAAGCTTGACAACTAAGCTTACAACAGAACAACTTGCTAATTTCCAGGCTGTTGTTTTTACTGAAATCAGTCTTGAGAAAGCCATTGAATTCGATGATTACTGCCACAGTCATAAACCTCCTATTGCCTTTATTAAAACTGAAGTTAGGGGGCTTTTTGGTTCTCTGTTTTGTGATTTTGGGCCCGAGTTCACTGTTTTTGATGTTGATGGAGAGGATCCTCATACTGGTATAATTGCATCGATCAGCAATGACAACCCTGCTCTTGTTTCTTGTGTTGATGATGAGAGGCTTGAGTTTCAGGATGGAGATCTGGTTATATTCTCTGAAGTTCATGGTATGAAAGAGTTGAATGATGGAAAGCCAAGAAAGATAAAAAATGCTAGAGCACATTCATTCACTCTTGAAGAAGACACCACAGATTATGGTAGATATGAAAAAGGTGGTATTGTAACACAGGTCAAACAACCAAAGGTTTTGAACTTTAAACCACTGAGGGAAGCACTCAGTGATCCAGGTGATTTTCTTCTGAGTGATTTTTCTAAGTTTGATCGCCCACCCCTACTGCATTTAGCATTCCAGGCTTTGGATAAGTTCGTATCCGAGATAGGTCGCTTCCCTGTTGCTGGTTCAGAGGATGATGCACAGAAACTTGTATCCATTGTCAGTAATATTAATGGTAGCTTAGGTGATGGAAGGTTGGAAGATGTGAATAAAAAACTTCTACAACAATTTGCCTCTGGTGCTCGGGCAGTATTGAACCCAATGGCAGCAATGTTTGGTGGATTTGTAGGACAAGAGGTTGTAAAGGCATGCTCTGGGAAATTTCATCCACTTTTTCAATTTTTCTACTTTGATTCTGTGGAGTCGCTTCCTACAGAACCACTGGATCCTAATGATTTAAAGCCGTTAAATAGTCGTTACGATGCACAGATTTCAGTTTTTGGACAAAAGTTGCAGAAGAAATTAGAGGATGCTGAAGTTTTTGTTGTTGGATCTGGTGCATTGGGATGTGAATTTTTGAAAAACCTTGCCCTAATGGGAGTTTCTTGTGGCCAGGGAAAACTGACAATTACTGATGATGATGTTATAGAAAAGAGTAACCTGACTAGACAGTTCCTCTTCCGTGATTGGAATATTGGCCAGGCGAAGTCTACAGTTGCTTCTTCAGCAGCTGCTTCTATAAATCCTCGTCTGAATATTGAAGCTCTACAAAATCGTGTTGGCCCAGAAACTGAAAATGTGTTTCATGACACCTTCTGGGAAAAGTTAAGTGTTGTGATTAATGCATTAGACAATGTGAGTGCAAGACTGTACGTTGATCAGAGGTGCTTATATTTCCAGAAGCCACTTCTTGAATCTGGTACACTTGGAGACAAATTCAATACCCAAATGGTCATCCCTCACCTAACAGAAAATTATGGTGCATCAAGAGATCCACCTGAGAAACAGGCGCCAATGTGTACCGTTCACTCCTTTCCTCATAACATTGACCACTGCTTGACTTGGGCTCGGTCAGAGTTTGAGGGTTTACTTGAGAAAACTCCAGCTGAAGTAAATGCATATTTATCTAATCCAAACGAATATACTAATGCGACGAGGAATGCTGGTGATGCTCAAGCAAGGGATAACTTGGAGCGTATTCTTGAGTGTTTGGACGAGGATAAGTGTCTGACTTTTGAAGATTGTATTTCATGGGCTAGGCTAAAGTTTGAAGATTATTTTGCTAACCGGGTAAAGCAATTAATTTATACTTTTCCTGAAGATGCTGCCACTAGTACTGGAGTTCCGTTCTGGTCTGCACCAAAACGATTCCCTCGTCCTCTGGAATTCTCATCATCTGATCCGGGTCATATGCAGTTTTTGATGGCAGCTGCTATACTACGTGCAGAAACATTTGGTATTCCAATTCCTGATTGGGTTAAAAATCCTAAGAAGTTGGCTGAAGTTGTTGATTTAGTGATTATACCTGACTTTAAGCCCAAGAAAGATGCAAATATAGTGACAGATGAGAAGGCCACCAGTCTCTCTTCTGCTTCTATAGATGATGCAGCTGTGATTAATGATCTAATCACCAAGTTAGAGGTGTGCCGGAAGAAGCTTCAACCAGATTTCAGGATGAAACCAGTTCAATTTGAGAAGGATGATGATACAAACTACCATATGGACCTGATAGCTGGACTTGCCAACATGAGGGCACGGAACTACAGCATTCCTGAAGTTGACAAGCTCAAGGCTAAGTTTATTGCTGGGAGGATTATTCCAGCAATTGCAACATCAACTGCCATGGCCACAGGGTTTGTCTGCCTGGAGCTGTACAAAGCTTTGGATGGAGGGCACAAAGTGGAGGACTACCGAAACACATTTGTCAACTTAGGAACGCCTTTCTTTTCCATGGCAGAGCCCGTTCCACCCAAGGTAATCAAGCATCAAGATATGAGTTGGACAGTTTGGGACAGATGGATCGTGAAAGACAATCCTACTCTAAGGGAGCTTCTTGAGTGGCTGAAGGCAAAAGGTTTGAATGCTTATAGTATTTCATGTGGAAGTTGTCTGCTCTATAACAGCATGTTCCCTAAGCATAAAGAGCGAATGGACAGAAAGATAGTGGATTTAGCTAGGGAGGTGGCCAAGATGGACATACCTTCAGACCGACATCACTTGGATGTTGTGGTTGCCTGTGAGGACGATGAAGACAATGACATTGACATCCCGCAAGTATCCATCTATTTTCGTTAG 3312 0.4357 MVARKGKTLGAFIRLLHYMLPRKRTSEGGVVVEGESDAGTNNNTSKKARITCFAACSGAAESAVNDISRGFSSGGDNSGGGNSIEGMALGVSNPAEIDEDLHSRQLAVYGRETMRKLFASSVLVSGMQGLGVEIAKNLILAGVKSVTLHDEGNVELWDLSSNFVFSENDVGKNRAVASVSKLQELNNAVAVLSLTTKLTTEQLANFQAVVFTEISLEKAIEFDDYCHSHKPPIAFIKTEVRGLFGSLFCDFGPEFTVFDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVIFSEVHGMKELNDGKPRKIKNARAHSFTLEEDTTDYGRYEKGGIVTQVKQPKVLNFKPLREALSDPGDFLLSDFSKFDRPPLLHLAFQALDKFVSEIGRFPVAGSEDDAQKLVSIVSNINGSLGDGRLEDVNKKLLQQFASGARAVLNPMAAMFGGFVGQEVVKACSGKFHPLFQFFYFDSVESLPTEPLDPNDLKPLNSRYDAQISVFGQKLQKKLEDAEVFVVGSGALGCEFLKNLALMGVSCGQGKLTITDDDVIEKSNLTRQFLFRDWNIGQAKSTVASSAAASINPRLNIEALQNRVGPETENVFHDTFWEKLSVVINALDNVSARLYVDQRCLYFQKPLLESGTLGDKFNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPNEYTNATRNAGDAQARDNLERILECLDEDKCLTFEDCISWARLKFEDYFANRVKQLIYTFPEDAATSTGVPFWSAPKRFPRPLEFSSSDPGHMQFLMAAAILRAETFGIPIPDWVKNPKKLAEVVDLVIIPDFKPKKDANIVTDEKATSLSSASIDDAAVINDLITKLEVCRKKLQPDFRMKPVQFEKDDDTNYHMDLIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGFVCLELYKALDGGHKVEDYRNTFVNLGTPFFSMAEPVPPKVIKHQDMSWTVWDRWIVKDNPTLRELLEWLKAKGLNAYSISCGSCLLYNSMFPKHKERMDRKIVDLAREVAKMDIPSDRHHLDVVVACEDDEDNDIDIPQVSIYFR 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00363 1103 Gene3D - 93 210 IPR042449 -
Phco3g00363 1103 FunFam ubiquitin-like modifier-activating enzyme 1 264 345 - -
Phco3g00363 1103 Gene3D - 519 996 - -
Phco3g00363 1103 Pfam Ubiquitin fold domain 1009 1098 IPR018965 -
Phco3g00363 1103 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 96 483 IPR035985 GO:0008641
Phco3g00363 1103 CDD Ube1_repeat1 101 486 - -
Phco3g00363 1103 PRINTS Ubiquitin-activating enzyme E1 signature 123 147 IPR000011 GO:0008641|GO:0036211
Phco3g00363 1103 PRINTS Ubiquitin-activating enzyme E1 signature 592 617 IPR000011 GO:0008641|GO:0036211
Phco3g00363 1103 PRINTS Ubiquitin-activating enzyme E1 signature 746 773 IPR000011 GO:0008641|GO:0036211
Phco3g00363 1103 PRINTS Ubiquitin-activating enzyme E1 signature 545 568 IPR000011 GO:0008641|GO:0036211
Phco3g00363 1103 PRINTS Ubiquitin-activating enzyme E1 signature 238 265 IPR000011 GO:0008641|GO:0036211
Phco3g00363 1103 ProSitePatterns Ubiquitin-activating enzyme active site. 677 685 IPR033127 -
Phco3g00363 1103 NCBIfam ubiquitin-activating enzyme E1 96 1103 IPR018075 -
Phco3g00363 1103 Pfam ThiF family 102 481 IPR000594 -
Phco3g00363 1103 Gene3D - 670 945 IPR042063 -
Phco3g00363 1103 FunFam Ubiquitin-activating enzyme E1 2 670 945 - -
Phco3g00363 1103 Gene3D - 220 509 - -
Phco3g00363 1103 FunFam Ubiquitin-activating enzyme E1 2 92 210 - -
Phco3g00363 1103 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 103 481 IPR045886 -
Phco3g00363 1103 Gene3D - 1011 1101 IPR038252 -
Phco3g00363 1103 FunFam Ubiquitin-activating enzyme E1 2 1011 1101 - -
Phco3g00363 1103 SMART UBA_e1_C_a_2 976 1098 IPR018965 -
Phco3g00363 1103 FunFam Ubiquitin-activating enzyme E1 1 519 680 - -
Phco3g00363 1103 Pfam Ubiquitin-activating enzyme E1 four-helix bundle 347 417 IPR032420 -
Phco3g00363 1103 FunFam Ubiquitin-activating enzyme E1 1 330 509 - -
Phco3g00363 1103 Pfam Ubiquitin-activating enzyme E1 FCCH domain 276 346 IPR032418 -
Phco3g00363 1103 CDD Ube1_repeat2 519 1056 - -
Phco3g00363 1103 Gene3D - 264 345 IPR042302 -
Phco3g00363 1103 Pfam Ubiquitin-activating enzyme, SCCH domain 685 938 IPR019572 -
Phco3g00363 1103 Pfam ThiF family 499 993 IPR000594 -
Phco3g00363 1103 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 494 993 IPR035985 GO:0008641
Phco3g00363 1103 ProSitePatterns Ubiquitin-activating enzyme signature 1. 461 469 IPR018074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00363 Phco-Chr3 2614825 2621460 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00363 3 2614825 2621460 Phco3g00363 3 2614825 2621460 ECH
Phco11g01684 11 12982670 12997603 Phco3g00363 3 2614825 2621460 PCT