Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00348 ATGACTTCGTGGGTGAGAGGCAAGTGCCTCGGTAAGGGTGCGTTTGGCGTTGTCAACGCGGCGGTTTCCAAAGCTGATGGTCGCGTTTTCGCGGTGAAGTCCGTGGATCGTGGAGCGGGGCACCCTCGTCAGCTGGAGGCGTTGGAGAACGAGATTCGGATTCTGAAAAGCGTGGCGTCGCCGCACGTCGTAGCTTATCTTGGCGACGACGTCACGTGCGAGCACGGTGGAACGGCGTCGTTTAGGAACCTTCATTTGGAGTACATGCCAGATGGCACCGTCGCTGATTTGGAACGCGCTGACTTGGACGAGCGTTCAGTGAGGCGCTACGCGTGGTGCCTCGTGAGCGCCCTGCGTGACGTCCACGCCCGCGGCTTCGTGCACTGCGACGTCAAGGGGAGGAACGTGCTCCTCTCCGGCAACCGCGCCGCCGCGAAACTCGCCGACTTCGGCGCGGCGATGGAAGTCGGAGCTTCGCCGGAGTTGTTGCCCCGCGGGAGTCCGATGTGGATGGCGCCGGAGGTGGTGCGCCGGGAGCGGCAGGGGCGGGAGTCCGATGTGTGGTCGCTCGGTTGCACGGTGATCGAGATTGTGAACGGGAAACCGGCGTGGGAGGATCACGGCGTGGACACGCTGAGTCGAATCGGTTACTCAGACGAGTTGCCGGAGTTTCCGAGCAAACTGTCGGAGGTAGGGAAAGATTTTCTTGAGAAGTGTCTGAGAAGAAATTGGAGTGAACGGTGGAGCTGCGATCAGCTACTGCAGCATCCATTTTTGCTTCCCTACGCCGTAGTTGAATCGTCGCCTCGTTGCGTTCTGGACTGGGTTGAGTCGGAGTTCGCGGAATCAGAATATAACGACCGCCAACAAGAAGGAGGGTGGTTAGAATTTAACCGCGAGGAAAATTCAGTTAAAAATAGAATTAGTAAATTAGCAACAGTATCGAGGGTAAATTGGGAAACACAGGGTTGGGTAGCGGTGAGGGAAGTCGAGCTAAACGAAGAATCATCGTCATCAACAAGAAGATGTGAAAGTGAAGATGGGGTAAATTGGGAATTTAGCAATGTGGTGAGCGTGGGGAGATGTTTGGAATGTTGGCATTGTGGAGGGGTAAGTAGGGAAATAGAAAATTTTGATGAGGAGCGTAACAGAGGTGGAGATTGGATCTGTGATGGGTATGGGTTGGAAAAGGTGGGTTGGGTAAGGGGAATATTGAGCATTTCCAGTTGTAAAACTTTGATGAGATTTTATTTATTGTTGTTAATATATTTAAATATATTATGGTTTTGGGTTATTTATGCCGTTTTCCTCTCTTTACTGCACGCCATTGAAAATAAATTAGAGGTGTGGGGTGATGGTACAATAAATTGA 1371 0.5252 MTSWVRGKCLGKGAFGVVNAAVSKADGRVFAVKSVDRGAGHPRQLEALENEIRILKSVASPHVVAYLGDDVTCEHGGTASFRNLHLEYMPDGTVADLERADLDERSVRRYAWCLVSALRDVHARGFVHCDVKGRNVLLSGNRAAAKLADFGAAMEVGASPELLPRGSPMWMAPEVVRRERQGRESDVWSLGCTVIEIVNGKPAWEDHGVDTLSRIGYSDELPEFPSKLSEVGKDFLEKCLRRNWSERWSCDQLLQHPFLLPYAVVESSPRCVLDWVESEFAESEYNDRQQEGGWLEFNREENSVKNRISKLATVSRVNWETQGWVAVREVELNEESSSSTRRCESEDGVNWEFSNVVSVGRCLECWHCGGVSREIENFDEERNRGGDWICDGYGLEKVGWVRGILSISSCKTLMRFYLLLLIYLNILWFWVIYAVFLSLLHAIENKLEVWGDGTIN 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00348 456 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 341 - -
Phco3g00348 456 CDD STKc_MAPKKK 3 259 - -
Phco3g00348 456 SUPERFAMILY Protein kinase-like (PK-like) 3 292 IPR011009 -
Phco3g00348 456 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Phco3g00348 456 Gene3D Transferase(Phosphotransferase) domain 1 2 338 - -
Phco3g00348 456 SMART serkin_6 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00348 456 ProSiteProfiles Protein kinase domain profile. 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00348 456 FunFam Serine threonine protein kinase putative 2 312 - -
Phco3g00348 456 Pfam Protein kinase domain 6 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00348 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00348 Phco-Chr3 2494066 2495436 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Phco3g00348 Pkinase 2e-52 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00348 3 2494066 2495436 Phco3g00348 3 2494066 2495436 ECH
Phco11g01710 11 13325882 13327276 Phco3g00348 3 2494066 2495436 PCT