Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00343 ATGGAAAAGAGAAAATTTTGTGGGTTGCGTCCACAGGTGCACCCTCCCGCACTAGAGCAGGAACCTTCTAACTCCTTCCCCTTCAATAGAATTCCTGTTAAGTGTGTGAGGAATAGGGTGGAGACAGAACTACGTTCCCGCGAGCCACGTCATGCATTAGTGCCAGCGTGGACCAATGAGAACGGAGGACGCAGAGTGACTAGGGAACAGGGGATTCTCGTGCGGCTTCTTGGAAAAGGGTGCCTGACACATTCTCAGTTGTCTGTCACCATGTCTCAGAATCATTCTCCAATGGATATTGATGGTGAGAGGTGTTATGAAAGCACTAAACGTAGAAGAGGGCGGAGGAAAAAAAAGCTTCTCGTCAACGAGAGAGTCGAGGTAAAAAGTGTGGAAGAGGGTTTTCTGGGTTCATGGCACCCGGGGACGGTGGTCCGTTGCGAGAGGCAGAAGCGTTATGTCAAATATGACAATATTCTAGATGATGATGAATCAAAATACCTTGTGGATGTGGTGTGTGTTTCAGCTGTTTTGGATGGTTATAGTTCTTCAGGTTGTAGCTTTGAACATGGATTCATCAGACCACTGCCTCCTCCGTTTGAGTTTGGTGAGAGGGACGTTCCATTTGGTCTCTGTGTTGATGTAAATTATCAAGAAGGCTGGTGGGAAGGTGTTATATTTGATCACTGTAATGGAATGGAGGAGAGGAGCGTGCTCTTCCCAGATTTGGGTGATGAAATGAAGGTAGGAACTCATCAATTGCGGATAACTCAGGAATGGGATGAAGCTACTGAGAATTGGCAGCCACGAGGGAAGTGGGTGTTCCTTGAAGTAGTTCAGGAGTGCGAAAAGGAATCCTTTGTTGCAGTTTCAGTGAAGCAAATATGGTATGATATAAGGACTAGAAAGGATTTTGACAATATAAAACATTGGACTTGTAATGATAAGGACTTGTGGAGAGCCCTTATAGTGGAGGTGATTAGTGACTACTATGTTCTCACACTAGAAGAAGTTTTCCCAGCTTTAAACCTTCCGGATGATTTCTTGAAAGAAACACAAGAACTGAACTCAGTTGAACCTACTGACAACATTCACTGTGATGCTGCACCCACTAACGTATTTAGTTCTGACATTATTGTTTCTGATATCCCTATGGAAAATGGTGGCATGTCAAACTTGTTGGATACCAATAAAAAAAGTGGTAGCATCAATTGCTTTCAAGAGGAATACGATAGAAATCCTTTGATGGATGGGCCATCAGAAAAGAAACTTATTTGGCTGGAGGAACCTATATCTCCTGTTCAGAAGATCATGCCTGATGCTGGTGAAGTAAAGCCGGGTGCTAGCTGTTGTTCAAAAAAGAGAAAACGCAGACGCTCAGTGTCCATTCGTTGGAAACCTCTGGTAGTGACCGAGGTTGAATTCTGTCCTGATGTTATTAACCAGTATTTACTTGGATGTGGTAGCAAGACCATTAGGGAACTTTTGAAGACTAAAGTATGGAAGCATCTAGCATATCTTGGATGGAAAATTGAGTGGACAGAAGATAGACATACTCCTGGACGTGGACGCTACAGGTACAAGTCACCTGATGCACATGACGAGAAGTTTTACACTTCAATTATTCAAGTTTTGACACATATGCAATTGGAGTCCAACATGAACACTATGCAGCCCCAACTTGATCACAGTAGGATGCGTTCTGCAAATGACACTAATCTTTCACTTCTGCTTTCAGACCAACCAAATGACCAGGATCTAGATGTTTGTCCTCCAAATGAGGGAAGTGTTGGGCATGTTGATAGCGATTATCTATCGCAAACCTTGTCCCAATTTCTTCAAAAAGAACCTGAATTGCATACTGCTTCACCAGCAAGTAAGTCCACTGAGAATAGAAACCAAAAAGACACCAGGAATTCAAAGGCCATCATGCCAAAGTGCCACATGAAAGGGTCACGTACAGAATGTCTAAGATCAAGCAAAAGGGTGCTGTCTGCCTCAAGTGTGTCACACCAACGACCTCAAAATGTTCTGTCTTGGTTAATAGATAGGGGCGTGCTGATGCGAAGATGTAAGGTCTATTACTGGGAAGAAGGAGGCAGTAACACTGCTTTAGCTCAGGGGAGGATTACTTATGATGGAATTAAGTGTAGCTGTTGCCAGAAAATATATGGTCTTCGGGGCTTTGTAAATCATGCTGGTGGAAGTGGTGACAGCAGGCCTTCTGCTTGCATATTTTTGAAGGATGGTAGATCACTCTTAGATTGCATGATAAAAGTCATGCACGATAGTAGAACAAGGGAAGATATGAACAGACCATGCAATGATCTGTTTGGAGGAGAAAATGACGATATTTGTTCTGTCTGTCAATATGGTGGTGAACTTATTTTGTGCGACAAATGTCCATCCGCATTTCATAGGACATGTCTTGGTTTGAACGATATCCCTCATGGTGACTGGTTTTGCCCATCATGTTGTTGTGCAATTTGCAGCCAAATCAAAACAGAAGGGTCTGAGGATGTACTTTTTCTTACTTGCATTCAATGTGAACACAAATATCACGTTGGATGCTTGAAAAATAGAGAAAAAGATGAGTCAAGAAGATATATGGAAAATTGGTTGTGTGGAAAAGAGTGTGAACAGATATATGCAGGCCTTCAAAGTCTATTAGGAAAGCCACTTATTGTGGGTCCGAACAATCTAACTTGGACACTGGAGAAGTTTAACAACTCTGAGAGTCCTGATGTTGGCAGTTCTCTGAATGACTTATTGGCAGAGAAATACAGCAAACTTAGTGTTGCACTTTCGGTGATGCATGAGTGTTTTGATCCCCTGAAGAACCCTTTCACTGGAAGAGATATCATTGACGATGTTATGTTCAACTCTAGGTCAGAGCTCAATCGATTGAATTTTCAGGGTTTCTACACTGTACTTCTGGAGCAAAATGAAGAACTGATTAGTGTAGCAACTATTAGGGTGTTTGGAGACAAAGTAGCCGAGGTACCGCTTGTAGGTACCAGAATACAATATCGTCGACTTGGAATGTGTCGCATTTTAATGAACGAGCTTGAGAAGAACCTCATGCAACTGGGAGTGGAGAGGCTAGTCTTGCCTGCTGTTCCTGCTGTGCTAGAAACTTGGACCAAATCTTTTGGCTTTGCACAGATGACAAATTTCGATAGGTCACAGTTCTTGGACTGTGCTTTCCTAGATTTTCAGGAAACCGTCATGTGCCAGAAGTTGTTGACAAGGATTCCATCTCCCCAGTCAGGTTTAACAAGAGAAACACAACGAAAACCACATGATATTTTGAGTCTTAAATGTAGAATTGAGTTTGACAAGTCGAGTTCAGCATCAGAAGTAGACCAACATGAAGAGATAGACAAAAGTAGGATGGATCAACAGGGGCTGGAGTGTGTCTCTACTCTTCCAACTTCCTAA 3441 0.4269 MEKRKFCGLRPQVHPPALEQEPSNSFPFNRIPVKCVRNRVETELRSREPRHALVPAWTNENGGRRVTREQGILVRLLGKGCLTHSQLSVTMSQNHSPMDIDGERCYESTKRRRGRRKKKLLVNERVEVKSVEEGFLGSWHPGTVVRCERQKRYVKYDNILDDDESKYLVDVVCVSAVLDGYSSSGCSFEHGFIRPLPPPFEFGERDVPFGLCVDVNYQEGWWEGVIFDHCNGMEERSVLFPDLGDEMKVGTHQLRITQEWDEATENWQPRGKWVFLEVVQECEKESFVAVSVKQIWYDIRTRKDFDNIKHWTCNDKDLWRALIVEVISDYYVLTLEEVFPALNLPDDFLKETQELNSVEPTDNIHCDAAPTNVFSSDIIVSDIPMENGGMSNLLDTNKKSGSINCFQEEYDRNPLMDGPSEKKLIWLEEPISPVQKIMPDAGEVKPGASCCSKKRKRRRSVSIRWKPLVVTEVEFCPDVINQYLLGCGSKTIRELLKTKVWKHLAYLGWKIEWTEDRHTPGRGRYRYKSPDAHDEKFYTSIIQVLTHMQLESNMNTMQPQLDHSRMRSANDTNLSLLLSDQPNDQDLDVCPPNEGSVGHVDSDYLSQTLSQFLQKEPELHTASPASKSTENRNQKDTRNSKAIMPKCHMKGSRTECLRSSKRVLSASSVSHQRPQNVLSWLIDRGVLMRRCKVYYWEEGGSNTALAQGRITYDGIKCSCCQKIYGLRGFVNHAGGSGDSRPSACIFLKDGRSLLDCMIKVMHDSRTREDMNRPCNDLFGGENDDICSVCQYGGELILCDKCPSAFHRTCLGLNDIPHGDWFCPSCCCAICSQIKTEGSEDVLFLTCIQCEHKYHVGCLKNREKDESRRYMENWLCGKECEQIYAGLQSLLGKPLIVGPNNLTWTLEKFNNSESPDVGSSLNDLLAEKYSKLSVALSVMHECFDPLKNPFTGRDIIDDVMFNSRSELNRLNFQGFYTVLLEQNEELISVATIRVFGDKVAEVPLVGTRIQYRRLGMCRILMNELEKNLMQLGVERLVLPAVPAVLETWTKSFGFAQMTNFDRSQFLDCAFLDFQETVMCQKLLTRIPSPQSGLTRETQRKPHDILSLKCRIEFDKSSSASEVDQHEEIDKSRMDQQGLECVSTLPTS 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00343 1146 SMART ring_2 827 882 IPR001841 -
Phco3g00343 1146 SMART ring_2 786 825 IPR001841 -
Phco3g00343 1146 SMART PHD_3 827 879 IPR001965 -
Phco3g00343 1146 SMART PHD_3 785 826 IPR001965 -
Phco3g00343 1146 Pfam PHD-finger 785 827 IPR019787 -
Phco3g00343 1146 Gene3D - 955 1081 - -
Phco3g00343 1146 Pfam Tify domain binding domain 708 759 IPR032308 -
Phco3g00343 1146 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 921 1082 IPR000182 GO:0016747
Phco3g00343 1146 SUPERFAMILY FYVE/PHD zinc finger 767 826 IPR011011 -
Phco3g00343 1146 MobiDBLite consensus disorder prediction 1114 1146 - -
Phco3g00343 1146 Pfam Agenet domain 124 198 IPR008395 -
Phco3g00343 1146 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 779 840 IPR013083 -
Phco3g00343 1146 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 972 1060 IPR016181 -
Phco3g00343 1146 MobiDBLite consensus disorder prediction 617 642 - -
Phco3g00343 1146 ProSiteProfiles Zinc finger PHD-type profile. 783 828 IPR019787 -
Phco3g00343 1146 PANTHER PHD FINGER PROTEIN 12 488 1124 IPR042163 GO:0003714|GO:0045892
Phco3g00343 1146 MobiDBLite consensus disorder prediction 1 21 - -
Phco3g00343 1146 CDD NAT_SF 977 1037 - -
Phco3g00343 1146 MobiDBLite consensus disorder prediction 1114 1133 - -
Phco3g00343 1146 CDD Tudor_Agenet_AtDUF_rpt1_3 122 198 - -
Phco3g00343 1146 SMART agenet_At_2 118 180 IPR014002 -
Phco3g00343 1146 SMART agenet_At_2 205 262 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00343 Phco-Chr3 2430139 2438089 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco3g00343 Agenet 2.8e-16 CL0049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00343 3 2430139 2438089 Phco3g00343 3 2430139 2438089 ECH
Phco11g01715 11 13405825 13412064 Phco3g00343 3 2430139 2438089 PCT