Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00335 ATGTGCGGTGTTTCCAAGGGGAAACCTTCTCAAATTGGTTTAGTGATGGAGGAAGAGTGTGGAAAAGAAGGGATGCATCACAGAATTTCTGCTTTGCTTGAGTTTTCTGCTGCGGATGATCTAATTGGCTTCAAAGAGGCGGTTGAAAAGGAGGGTCATGATGTTGATGGGGTGGGGTTGTGGTATGGAAGGCGTGCTGGCTCAAAGAGAATAGGTTATGAAGAGAGGACTGCTCTCATGGTTGCTTCTACGTTTGGAAGCCTTGATGTGTCAGCTTATATTCTTGGAACCGGTCGTGTTGATGTTACCCGGGCCAGTAGGTCAGATGGGGCTACTGCTCTTCATTGTGCTGTTGCTGGGGGTTCTGCTGCTTCTGTTGAGATTGTCAAGCTTTTGCTTGATGCATCTGCTGATGTTAGTGCTGTTGATGCTGATGGTAACAGGCCAATTGACTTGATTGTTTCTGTGGCTAATTCTATCTTCAGTCCAAGGGCCAGGGTGCTACAGGCCCTCCTGGAGGGTACCTGTGATGCTGCTGATCAGACATGTTTCTCACTTCCACAAGTGATTGACCAAATTGAGGAACAAAGGCAAGAAACGACCACACCTCGTGTTTCCAAAGATTATCCCATTGATCTCTCCCTTCCAGACATAAAGAATGGGATATATGGCACTGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCCAGGGCCTATTCTCATGACTGGACCGAGTGCCCCTTTGTTCATCCAGGGGAGAACGCAAGGCGACGTGATCCAAGGAAATACCATTACAGCTGTGTCCCTTGTCCTGAGTTTCGGAAGGGATCTTGCAGCAAAGGGGATGCCTGTGAGTATGCTCATGGTATATTTGAGTGCTGGCTTCACCCTGCCCAGTACCGGACGAGGCTCTGCAAGGATGAGAGTGGGTGCACAAGGAGAGTTTGCTTCTTTGCACACAAGGCGGAGGAGCTTCGTCCCTTGTATGCTTCTACAGGTTCTGCTATTCCTTCTCCAAGGTCCTATTCTGTTAGTGCTTCTGCATTGGAGATGGGTTCAGTTAGCCCAATTGCACTTGGTTCTCCATCAATCTTGATACCGCCTGCCTCAAAACCACCTTTGACTCCATCTGGGGCATCTTCTCCTACCATTTGGTCTCAATCTAATATTTCAGTCCCCACCCTGCAGCTACCCAAAAGCAGATTGAAGGCTGCCTCAGCTGCAAGAGACATTGATTTGGATTTTGAACTGCTTGGACTTGAAACTCATCGGCGTAGACAACAGCTAATGATGGATGAGATGTCTGGTCTTTCCTCTCCTACCAACTGGAAAAATTCCATGCCTAATAGTCCATCTTTTCATGTTTCTCTGAGTGATCACATTGGGGAGTTAAATAGGCTTTCAGGGGTGAAGCCTTCAAACCTTGAAGATACTTTTGGATCTCCTGAACCATCAATTTTGTCTAAATTCCATGGAATCTCACTTGATGTTGCAGGACCTCAGTTACAATCTCCAACTGGAATCCAAATGCGTTCGAATATGAACCAGCAGCTGGGAGGCTATTCATCGGGCCTTTCCATGTCAAACATGGTTGAATCGAGACCCTTCAGGGTTGATCCATCTGCTGAAGGAGCCTCTGTGGCTTTGAATCCAAGAGCTGCTGCCTTTGCAAAGCGTAGCCACAGCTTTATCGAGCGAAGCATGGTGAACCATCATTCTGAGCTTCCTTCTCCAAAGCTCTCCACCTTCTCCAACTGGGGCTCACCTGATGGAAAACTGGATTGGGCCATAAATGGAGATGAGCTGAATAAACTGAGGAAATCTGCATCCTTTGGATTTCGAAGCAGCAACAGTCCCATCACAGAGGCTTCAACCAAAATGGCAGCAAATGTTGATGATGAGCCGGACGTGTCTTGGGTTAACTCACTTGTTAAGGATGCTCCACCAGAATCTGGGGTCGAAGATCAGCCAAAACAATGCCATAATGGAACAGAAACAATTCCAGCGTGGTTGGAGCAAATGTACTTGGATCAGGAGCAAATGGTGGCGTGA 2061 0.4726 MCGVSKGKPSQIGLVMEEECGKEGMHHRISALLEFSAADDLIGFKEAVEKEGHDVDGVGLWYGRRAGSKRIGYEERTALMVASTFGSLDVSAYILGTGRVDVTRASRSDGATALHCAVAGGSAASVEIVKLLLDASADVSAVDADGNRPIDLIVSVANSIFSPRARVLQALLEGTCDAADQTCFSLPQVIDQIEEQRQETTTPRVSKDYPIDLSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDESGCTRRVCFFAHKAEELRPLYASTGSAIPSPRSYSVSASALEMGSVSPIALGSPSILIPPASKPPLTPSGASSPTIWSQSNISVPTLQLPKSRLKAASAARDIDLDFELLGLETHRRRQQLMMDEMSGLSSPTNWKNSMPNSPSFHVSLSDHIGELNRLSGVKPSNLEDTFGSPEPSILSKFHGISLDVAGPQLQSPTGIQMRSNMNQQLGGYSSGLSMSNMVESRPFRVDPSAEGASVALNPRAAAFAKRSHSFIERSMVNHHSELPSPKLSTFSNWGSPDGKLDWAINGDELNKLRKSASFGFRSSNSPITEASTKMAANVDDEPDVSWVNSLVKDAPPESGVEDQPKQCHNGTETIPAWLEQMYLDQEQMVA 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00335 686 SMART ANK_2a 74 104 IPR002110 GO:0005515
Phco3g00335 686 SMART ANK_2a 109 141 IPR002110 GO:0005515
Phco3g00335 686 Pfam Ankyrin repeats (3 copies) 67 142 IPR002110 GO:0005515
Phco3g00335 686 ProSiteProfiles Ankyrin repeat region circular profile. 109 143 - -
Phco3g00335 686 ProSiteProfiles Ankyrin repeat profile. 109 144 IPR002110 GO:0005515
Phco3g00335 686 FunFam Zinc finger CCCH domain-containing protein 66 225 293 - -
Phco3g00335 686 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 292 IPR000571 GO:0046872
Phco3g00335 686 Gene3D - 268 330 - -
Phco3g00335 686 PANTHER UNKEMPT FAMILY MEMBER 34 650 IPR045234 -
Phco3g00335 686 ProSiteProfiles Zinc finger C3H1-type profile. 272 294 IPR000571 GO:0046872
Phco3g00335 686 SUPERFAMILY Ankyrin repeat 70 158 IPR036770 -
Phco3g00335 686 SMART c3hfinal6 267 293 IPR000571 GO:0046872
Phco3g00335 686 SMART c3hfinal6 302 325 IPR000571 GO:0046872
Phco3g00335 686 Gene3D - 29 178 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00335 Phco-Chr3 2379490 2381550 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco3g00335 Ank_2 1e-06 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00335 3 2379490 2381550 Phco3g00335 3 2379490 2381550 ECH